Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtcaggaaaatgcagctagctctttgttaaagcttttttgaatttttcgttagacagtgagatcaaggtctaatacgtggtgccgcctttttgttaaatatactagCAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAATGACCGACAACTTCTGCGCCGGTGTCTGCGCTTCAACAGTCCACAAATG

Basic information

species Vitis vinifera
transcript Vv15s0048g02000.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g02000.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G08340.1 (Glycine max), 3'ss of exon 8
gtagtgtcaggaaaatgcagctagctctttgttaaagcttttttgaatttttcgttagacagtgagatcaaggtcta-atacgtggtgccgcctttttgttaaatatactagCAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAATGACCGACAACTTCTGCGCCGGTGTCTGCGCTTCAACAGTCCACAAATG---
      |   |  | |     ||  |  || |||    || |||  ||||||  || || |   | || || |  |  ||   |||||        ||||  | |||  | ||||||||||| ||||| ||  ||||||||||| |||||||||| || || |||||  ||||||||||||| || || ||||| ||||| || ||||| ||   
----aattttggcattattatta--ttattattattatttgtttagatttttattttgagaagtaaatgaatgagtgcatgtatggtg--------ttgtgtattatggt-gcagCAATAACAGCAGGGGGAAGGCGGAGCATGATGAAGCTGGCGCAGCGGATGACGAACAACTTCTGCGCGGGGGTGTGCGCGTCAACGGTGCACAAGTGGAA

upper sequence: Vv15s0048g02000.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G01860.1 (Glycine max), 3'ss of exon 7
gtagtgtcaggaaaatgcagctagctctttgttaaagcttttttgaatttttcgttagacagtgagatcaaggtctaatacgtggtgccgcctttttgttaaatatactagCAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAATGACCGACAACTTCTGCGCCGGTGTCTGCGCTTCAACAGTCCACAAATG---
      | |  |  ||     |   |   | ||  |  || |||  || | |  | ||| ||| |  |  | ||  |||   |  |   |    | || |  ||    | ||||||||||| ||||| ||  || |||||||| |||||||||| || || |||||  ||||||||||||| || || ||||| || || || ||||| ||   
-----attattattattattattatttagtattgta-tttgtttagatatattttgaga-agtaaatt--aagttaaatgaataataatg----tatggtggatggg-tggcagCAATAACAGCAGGGGGAAGGAGGAGCATGGTGAAGCTGGCGCAGCGGATGACGAACAACTTCTGCGCGGGGGTGTGCGCCTCGACGGTGCACAAGTGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863553|gb|DT012608.1|DT012608
EST:     GTGTCTCGCCATACTCATGTCCTCGACCGTGCCCACCCGGGATCACACAG                         CAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAA
genomic: GTGTCTCGCCATACTCATGTCCTCCACCGTGCCCACCCGGGATCACACAGgtagtgtcag ... aatatactagCAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAA
EST: gi|71861484|gb|DT010539.1|DT010539
EST:     GTGTCTCGCCATACTCATGTCCTCGACCGTGCCCACCCGGGATCACACAG                         CAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAA
genomic: GTGTCTCGCCATACTCATGTCCTCCACCGTGCCCACCCGGGATCACACAGgtagtgtcag ... aatatactagCAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAA
EST: gi|71860193|gb|DT009248.1|DT009248
EST:     GTGTCTCGCCATACTCATGTCCTCGACCGTGCCCACCCGGGATCACACAG                         CAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAA
genomic: GTGTCTCGCCATACTCATGTCCTCCACCGTGCCCACCCGGGATCACACAGgtagtgtcag ... aatatactagCAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAA
EST: gi|71861454|gb|DT010509.1|DT010509
EST:     GTGTCTCGCCATACTCATGTCCTCGACCGTGCCCACCCGGGATCACACAG                         CAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAA
genomic: GTGTCTCGCCATACTCATGTCCTCCACCGTGCCCACCCGGGATCACACAGgtagtgtcag ... aatatactagCAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacagtgagatcaaggtctaatacgtggtgccgcctttttgttaaatatactagCAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAATGACCGACAACTTCTGCGCCGGTGTCTGCGCTTCAACAGTCCACAAATG
                gtctaat  putative branch site (score: 3)
                                    tttttgttaaatatac  TA-rich tract