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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggtagcattaggcttttaattttcattgcaaatcatgggtgagaatgaaaatttttggggctttttgctaataagactacttgtgtttctgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAATCTGCAGGAAGCAGGCTTCATTGTCATTAAATAATCAGTGCTTTGGTAG

Basic information

species Vitis vinifera
transcript Vv15s0048g01890.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51052191|gb|CO819435.1|CO819435
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110685319|gb|EE063602.1|EE063602
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGGAGGATTAAAGC-AAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|32244996|gb|CD710815.1|CD710815
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|34543960|gb|CF512192.1|CF512192
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACC
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACC
EST: gi|30254158|gb|CB971173.1|CB971173
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACC
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACC
EST: gi|30256477|gb|CB972320.1|CB972320
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|83274903|gb|DV938999.1|DV938999
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|32457484|gb|CD798658.1|CD798658
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|22011190|gb|BQ796224.1|BQ796224
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110701786|gb|EE079758.1|EE079758
EST:     GTGTGACAAGAGGCTTCAGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACA
EST: gi|26264448|gb|CA815511.1|CA815511
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110413573|gb|EC979363.1|EC979363
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCA
EST: gi|33408964|gb|CF214591.1|CF214591
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|26263259|gb|CA814322.1|CA814322
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|33408880|gb|CF214507.1|CF214507
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCA
EST: gi|30253808|gb|CB971093.1|CB971093
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTNNNNNNNAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|45771471|gb|CN007323.1|CN007323
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|27584695|gb|CB007390.1|CB007390
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|156735526|gb|EV239647.1|EV239647
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAN
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|34544048|gb|CF512280.1|CF512280
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACC
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACC
EST: gi|22012360|gb|BQ797394.1|BQ797394
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|30256179|gb|CB972022.1|CB972022
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTNNNNNNNAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|32245233|gb|CD711052.1|CD711052
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110360051|gb|EC922598.1|EC922598
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|29784482|gb|CB345278.2|CB345278
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACNAAAATCCAAGACATCCTGAAGGAG-AAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|26258151|gb|CA809214.1|CA809214
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCCCCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110730254|gb|EE107122.1|EE107122
EST:     GTGTGACAAGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAA-TCCAAGACATCCTG
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTG
EST: gi|71889379|gb|DT038434.1|DT038434
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|46910256|gb|CN545631.1|CN545631
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCNNNNNNNTCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110699462|gb|EE076482.1|EE076482
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCCAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110694713|gb|EE072070.1|EE072070
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCNTTCCCTCAC
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGC-TTCCCTCAC
EST: gi|45771661|gb|CN007513.1|CN007513
EST:     GCGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110697675|gb|EE074871.1|EE074871
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|56408905|gb|CX017157.1|CX017157
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110404214|gb|EC968923.1|EC968923
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|77586244|gb|DV222221.1|DV222221
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|28960193|gb|CB340097.1|CB340097
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCCCCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110376382|gb|EC941443.1|EC941443
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|32460366|gb|CD801540.1|CD801540
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110360721|gb|EC924050.1|EC924050
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|110370992|gb|EC934673.1|EC934673
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|26265906|gb|CA816969.1|CA816969
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCT-T-AG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATCAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|26266629|gb|CA817692.1|CA817692
EST:     GTGTGACAGGGGGCTTCGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
EST: gi|71884816|gb|DT033871.1|DT033871
EST:     GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAG                         CTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA
genomic: GTGTGACAGGGGGCTTTGGATTTGTTAGCTCCCTCATCTCTTGCTATCAGgtgcttgcca ... tgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaaaatttttggggctttttgctaataagactacttgtgtttctgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAATCTGCAGGAAGCAGGCTTCATTGTCATTAAATAATCAGTGCTTTGGTAG
                     tgctaat  putative branch site (score: 2)
                                         tttctgtt  putative PPT
     aattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gggtagcattaggcttttaattttcattgcaaatcatgggtgagaatgaaaatttttggggctttttgctaataagactacttgtgtttctgttatgcagCTGCTTCCCTCACCACCAAAATCCAAGACATCCTGAAGGATTAAAGCCAAATCTGCAGGAAGCAGGCTTCATTGTCATTAAATAATCAGTGCTTTGGTAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - aaatcat
- - - - - - - - - - - - - - - - - - -gggtgag
- - - - - - - - - - - - - - - - - - - - - - -atgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacttg