Sequence
atgc intronic sequence ATGC exonic sequencegtattcgaagtttttgggctataatgtccttgagcgtgtattatcaccttcatttcttcctgttctccatattaatggctctagtactatgctttctttttgatgtataatatgcctttagTGCACCTGAGAAAATCAAAGCTATGGGTCAAGTTCTGTCAAAAGCGAAAGAGCAGTTATATGACTGCAAGCTGGTCACTGGGAAGCTGAGAGCAATGCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g01300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G379577_T01 (Zea mays), 3'ss of exon 6
gtattcgaagtttttgggctataatgtccttgagcgtgtattatcaccttcatttcttcctgttctccatattaatggctctagtactatgctttctttttgatgtataatatgcctttagTGCACCTGAGAAAATCAAAGCTATGGGTCAAGTTCTGTCAAAAGCGAAAGAGCAGTTATATGACTGCAAGCTGGTCACTGGGAAGCTGAGAGCAATGCTT
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-----------------------------------gtgtgt-atctgcttcacttctttccttattctgggaaaaactgtttcttacttttctc-cttttaactatctactttgc----agCGCACCTGAGAAAATCATAGCGATGGGTCAAGTTTTATCAAAGGCTAGAGAAGAAGTTTATAATTGTATGGCAATCACTCAGAAACTAAGGGCTATGCTT
upper sequence: Vv15s0048g01300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G08910.1 (Glycine max), 3'ss of exon 4
gtattcgaagtttttgggctataatgtccttgagcgtgtattatcaccttcatttcttcctgttctccatattaatggctctagtactatgctttctttttgatgtataatatgcctttagTGCACCTGAGAAAATCAAAGCTATGGGTCAAGTTCTGTCAAAAGCGAAAGAGCAGTTATATGACTGCAAGCTGGTCACTGGGAAGCTGAGAGCAATGCTT
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-----------gtttgaaccatg-tgtaattttttgagtatatttatctgcactttaatccctttg--aatttgctgacttaactggt-----------tgagtgtctaat-tatctctagTACACATGGGAAAATAAAGGCTATGGGTCAAGTTCTATCAAAAGCAAGAGAGCAATTGTATGACTGCAACTTGGTCACTGGAAAACTAAGAGCAATGCTA
upper sequence: Vv15s0048g01300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G02250.1 (Glycine max), 3'ss of exon 12
gtattcgaagtttttgggctataatgtccttgagcgtgtattatcaccttcatttcttcctgttctccatattaatggctctagtactatgctttctttttgatgtataatatgcctttagTGCACCTGAGAAAATCAAAGCTATGGGTCAAGTTCTGTCAAAAGCGAAAGAGCAGTTATATGACTGCAAGCTGGTCACTGGGAAGCTGAGAGCAATGCTT
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--gtctgaagccatg----tgtaatttttttatg-gagtatatttatcttcactttaatccctttg--aatttgctgacttaattggt-----------tgagtgtctaat-tatctctagTACACATGGGAAAATAAAGGCTATGGGTCAAGTTCTATCAAAAGCAAGAGAGCAATTGTATGACTGCAAATTGGTCACTGGAAAACTAAGAGCAATGCTA
upper sequence: Vv15s0048g01300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G40260.1 (Glycine max), 3'ss of exon 7
gtattcgaagtttttgggctataatgtccttgagcgtgtattatcaccttcatttcttcctgttctccatattaatggctctagtactatgctttctttttgatgtataatatgcctttagTGCACCTGAGAAAATCAAAGCTATGGGTCAAGTTCTGTCAAAAGCGAAAGAGCAGTTATATGACTGCAAGCTGGTCACTGGGAAGCTGAGAGCAATGCTT
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------------------gtatgaaagctatgagcaattttctctaaagtgatatccatttgctttgcat--taa--gccattaaccaactttactaatcaaatatttaat-tatctgtagTGATCATGAAAAAATCAAAACTATGGGCCAAGTTCTTTCCAAGGCAAAAGAGCAATTGTATGACTGCAAGTTGGTTACTGGGAAATTGAGGGCAATGCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30300186|gb|CB976980.1|CB976980EST: AGTCAACGTTCTTTAGGAGAGGCAAGTGCTGATTCTGATTTACACCACAG TGCACCTGAGAAAATCAAAGCTATGGGTCAAGTTCTGTCAAAAGCGAAAGA
genomic: AGTCAACGTTCTTTAGGAGAGGCAAGTGCTGATTCTGATTTACACCACAGgtattcgaag ... atgcctttagTGCACCTGAGAAAATCAAAGCTATGGGTCAAGTTCTGTCAAAAGCGAAAGA
EST:
gi|161712593|gb|FC062195.1|FC062195EST: AGTCAACGTTCTTTAGGAGAGGCAAGTGCTGATTCTGATTTACACCACAG TGCACCTGAGAAAATCAAAGCTATGGGTCAATTTCTGTCAAAAGCGAAAGA
genomic: AGTCAACGTTCTTTAGGAGAGGCAAGTGCTGATTCTGATTTACACCACAGgtattcgaag ... atgcctttagTGCACCTGAGAAAATCAAAGCTATGGGTCAAGTTCTGTCAAAAGCGAAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccatattaatggctctagtactatgctttctttttgatgtataatatgcctttagTGCACCTGAGAAAATCAAAGCTATGGGTCAAGTTCTGTCAAAAGCGAAAGAGCAGTTATATGACTGCAAGCTGGTCACTGGGAAGCTGAGAGCAATGCTT
tgccttt CT-rich tract
tttctttttgatgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattcgaagtttttgggctataatgtccttgagcgtgtattatcaccttcatttcttcctgttctccatattaatggctctagtactatgctttctttttgatgtataatatgcctttagTGCACCTGAGAAAATCAAAGCTATGGGTCAAGTTCTGTCAAAAGCGAAAGAGCAGTTATATGACTGCAAGCTGGTCACTGGGAAGCTGAGAGCAATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA