1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccttcataagaaaagcttgatttagaccattctccacatatttctgaacaaatttttgcagacaaaactctaatgtaggagtggctgtgtatcaaaacagGTACCATCACTATGTTCCAGCAGAAGGGCCGTCTGTTTCAAAGAGCATGGCTGGTGAGAGCAACTTCATCCAAGGGTGGGTTCTTTGAAGTAGTGTTTGA
species | Vitis vinifera |
transcript | Vv15s0048g01270.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCCAATCTAACCCAATGGACTGCGAACCCGAACCCATCTTGCAAATTGG GTACCATCACTATGTTCCAGCAGAAGGGCCGTCTGTTTCAAAGAGCATGGCEST: gi|71868273|gb|DT017328.1|DT017328
genomic: TCCCAATCTAACCCAATGGACTGCGAACCCGAACCCATCTTGCAAATTGGgtacacttca ... atcaaaacagGTACCATCACTATGTTCCAGCAGAAGGGCCGTCTGTTTCAAAGAGCATGGC
EST: TCCCAATCTAACCCAATGGACTGCGAACCCGAACCCATCTTGCAAATTGG GTACCATCACTATGTTCCAGCAGAAGGGCCGTCTGTTTCAAAGAGCATGGCEST: gi|110689144|gb|EE065109.1|EE065109
genomic: TCCCAATCTAACCCAATGGACTGCGAACCCGAACCCATCTTGCAAATTGGgtacacttca ... atcaaaacagGTACCATCACTATGTTCCAGCAGAAGGGCCGTCTGTTTCAAAGAGCATGGC
EST: TCCCAATCTAACCCAATGGACTGCGAACCCGAACCCATCTTGCAAATTGG GTACCATCACTATGTTCCAGCAGAAAGGCCGTCTGTTTCAA-GAGCATGGC
genomic: TCCCAATCTAACCCAATGGACTGCGAACCCGAACCCATCTTGCAAATTGGgtacacttca ... atcaaaacagGTACCATCACTATGTTCCAGCAGAAGGGCCGTCTGTTTCAAAGAGCATGGC
gaacaaatttttgcagacaaaactctaatgtaggagtggctgtgtatcaaaacagGTACCATCACTATGTTCCAGCAGAAGGGCCGTCTGTTTCAAAGAGCATGGCTGGTGAGAGCAACTTCATCCAAGGGTGGGTTCTTTGAAGTAGTGTTTGA
ctctaat putative branch site (score: 3)
aattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttcataagaaaagcttgatttagaccattctccacatatttctgaacaaatttttgcagacaaaactctaatgtaggagtggctgtgtatcaaaacagGTACCATCACTATGTTCCAGCAGAAGGGCCGTCTGTTTCAAAGAGCATGGCTGGTGAGAGCAACTTCATCCAAGGGTGGGTTCTTTGAAGTAGTGTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
ccttcat
- - - -aagaaaa
- - - - - - - - - - - - - - - -ctccaca
- - - - - - - - - - - - - - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgt