1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgtgcttacaatattctatactgttgaagttctcttgtgattttatcatgtttatttccagttaatttgactaatttattcaaaaaccctttctctaatcttcttttcaattaaatcttcttcccattgtgttatttgtatttccttctattagattaatttatcaaaaaaaatcttgcctcttttgcatgtgcagAAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGTCTGGATCTTAAGATGGAAGCTAAATAAAGTTATGCTTTTTCCAGCTCTT
species | Vitis vinifera |
transcript | Vv15s0048g01140.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAG AAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGTEST: gi|110418220|gb|EC984349.1|EC984349
genomic: AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAGgtgtgcttac ... gcatgtgcagAAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGT
EST: AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAG AAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGTEST: gi|161709850|gb|FC059329.1|FC059329
genomic: AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAGgtgtgcttac ... gcatgtgcagAAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGT
EST: AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATGTCTCACAG AAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGT
genomic: AAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAGgtgtgcttac ... gcatgtgcagAAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGT
ttccttctattagattaatttatcaaaaaaaatcttgcctcttttgcatgtgcagAAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGTCTGGATCTTAAGATGGAAGCTAAATAAAGTTATGCTTTTTCCAGCTCTT
gattaat putative branch site (score: 3)
tcttgcctcttttgc putative PPT
tctattagattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcttacaatattctatactgttgaagttctcttgtgattttatcatgtttatttccagttaatttgactaatttattcaaaaaccctttctctaatcttcttttcaattaaatcttcttcccattgtgttatttgtatttccttctattagattaatttatcaaaaaaaatcttgcctcttttgcatgtgcagAAAAGATAATAGAGCTCATCACTGGAGCTCAGACGCGGTACACTTACATGTCTGGATCTTAAGATGGAAGCTAAATAAAGTTATGCTTTTTCCAGCTCTT
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