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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacccttaaattcaaaatgagttggtccaactcctataggagttcagaatgaatcctatttgtaacagtatgagagatgtagaacactactaatgcttttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC

Basic information

species Vitis vinifera
transcript Vv15s0048g00300.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os06g04300.1 (Oryza sativa), 3'ss of exon 6
gtatacccttaaattcaaaatgagttggtccaactcctataggagttcagaatgaatcctatttgtaacagtatgagagatgtagaacactactaatgcttttttccccgtctctaattcaattgt--agATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                         || | |   |  | ||      || ||  |||| ||||| |     ||| |              | |||  |  |  || |   |  || | ||  ||    ||||||||||||||| |||||||||||||||||||| ||  |||| || ||||| ||||| ||||| ||||| |||||||| || || || ||| | |||||
----------------------gtatgatgctgtttgtttatag--ccacaagcaatc-tatttattctcttatcaac-----------ttgctaggggctggtttctgatagctgaatctgtttctcagATGGAATGAAGCTGTACATTTCAGACAACAAGGTGATTCTGACAGAGGGTTTCGATGGCGTTGTTCCTGTGAAGTACTTCGAGAAAATTGAAACATGGCC

upper sequence: Vv15s0048g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G061783_T04 (Zea mays), 3'ss of exon 4
gtatacccttaaattcaaaatgagttggtccaactcctataggagttcagaatgaatcctatttgtaacagtatgagagatgtagaacactactaatgcttttttccccgtctctaattcaat-tgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                      | |   |    ||   | |   | ||  ||  |||    || ||     | |||| | |  ||   | || |||  | |              ||||   |  | || ||| |||||||| || |||||||||||||| || |||||||| |||||||||||||| || || || || || ||||||||||   | ||| | |||||
--------------------gtactatataatgcttacaaataggctcccaaaaaatttctttcgttt---tctgagtgctagaggctaata-taacaccta-------------aatttgttgcgcagGTGGGATGAAGCTTTATATTTCAGACAACAAAGTGATCTTGACAGAAGGTTTTGATGGCGTCGTCCCGGTGAAATACTTTGAAAGAGTCGAAACATGGCC

upper sequence: Vv15s0048g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G092568_T02 (Zea mays), 3'ss of exon 4
gtatacccttaaattcaaaatgagttggtccaactcctataggagttcagaatgaatcctatttgtaacagtatgagagatgtagaacactactaatgcttttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGT------TTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
            | | |||   | |   |    ||   | |   |  |  ||  ||     || ||     | |||| | |  ||     || |||  | |   |    ||| |          | |||||| |||||||| || |||||||||||||| || |||||||| ||||||      |||||||| ||||| ||||| || ||||||||||  || ||| |      
------------acttaaaggtactatataatgcttacaaataggcccccaaaaaaattctttcgttt---tctgagtgctagaggctgata-taacacctaaattt--gtcgc----------gcagATGGGATGAAGCTTTATATTTCAGACAACAAAGTGATCTTGACAGAAGGTTTTGGTTTTGATGGCGTTGTCCCTGTGAAATACTTTGAAAGAATCGAAAC------

upper sequence: Vv15s0048g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G092568_T01 (Zea mays), 3'ss of exon 7
gtatacccttaaattcaaaatgagttggtccaactcctataggagttcagaatgaatcctatttgtaacagtatgagagatgtagaacactactaatgcttttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTT------TGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                                     ||||    ||   |||    ||       || | | |      |   ||    | |||  |  |  |    |  ||  | ||     | |||||| |||||||| || |||||||||||||| || |||||||| ||||||||      |||||| ||||| ||||| || ||||||||||  || ||| |      
-------------------------------gtactatataatgcttacaaataggcccc--caaaaaaattctttcgttttctgag---tgctagaggctgatataacacctaaatttgtcgcgcagATGGGATGAAGCTTTATATTTCAGACAACAAAGTGATCTTGACAGAAGGTTTTGGTTTTGATGGCGTTGTCCCTGTGAAATACTTTGAAAGAATCGAAAC------

upper sequence: Vv15s0048g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G37310.1 (Glycine max), 3'ss of exon 9
----------------------gtatacccttaaattcaaaatgagttggtccaactc---ctataggagttcagaatgaatcctatttgtaa-cagtatgagagatgtagaacactactaatgcttttttccccgt-----ctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                        ||   ||  || | ||  |      || || ||     | | ||| ||     ||  |  |  | || |  |  ||     |   | || |||||| ||   |  ||| |  |      | | || | |||  ||| || |||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||
gtatgatatgacaatattccaaacatgttct-gaactgaatgtctacaagttcatcttgaaatgttggattttttgttgtctattgatagtgagtaaaatctacaacaaataagactactgatagctacttctctatatattttttcatcctatttcagAAGGTATGAAGCTTTACATTTCTGACAACAAGGTGATCTTGACGGAAGGTTTTGATGGTGTTGTTCCTGCCAAGTATTTTGAAAAGATAGAATCATGGCC

upper sequence: Vv15s0048g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G29450.1 (Glycine max), 3'ss of exon 7
gtatacccttaaattcaaaatgagttggtccaactcctataggagttcagaatgaatcctatttgtaacagtatgagagatgtagaacactactaatgcttttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                 |||||  ||||      |  | |  |  || | | ||| |   || |  ||||  || |||  |   || | |||||     | | |      | | | || | |||  |||  | || ||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||| |||   ||||| ||||||| ||||||||| |||||
-----------------aaatg--ttggattttttgttgtttg--ttgatagtgagtaaaatctacaacaa-ataagat-tactgatcgctact-----tctctatatattttttcatcctatttcagAAAGTATAAAGCTTTACATTTCTGACAACAAGGTGATCTTGACGGAAGGTTTTGATGGTGTTGTTCCTCCGAAGTATTTTGAAAGGATAGAATCATGGCC

upper sequence: Vv15s0048g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S213_28V6.1 (Physcomitrella patens), 3'ss of exon 7
gtatacccttaaattcaaaatgagttggtccaactcctataggagttcagaatgaatcctatttgtaacagtatgagagatgtagaacactactaatgcttttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                      | || |||   |  ||   | |  |  |  |||  | |       |       |   |   | | ||    |    |   |     |||  || |      || ||||||||||||||||||| ||||||| ||||| ||| |  | |||||||| |||||||| || || ||    || || ||| | ||  | |       |  
----------------------atttagtcatgcaactgccgca--ttggtgtgagccattgagcggatgaatccaatcactcaaagcatgttttgaacggata----cgtacctgaaatgtgtgcagATGGAATGAAGCTCTACGTTTCAGATAACAAAGTCGTTCTCACCGAAGGCTTTGATGGGGTGGTTCCGACTAAATATTTTAAGAATGTCGTCAAGAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagagatgtagaacactactaatgcttttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                         cttttttccccgtctc  CT-rich tract
                                         taattcaatt  TA-rich tract