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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacctttaaattcaaaatgaattggtccaactcctataggagttcagaatgaatcctatctgtaacagtataagagatgtagaacactactaatgctttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC

Basic information

species Vitis vinifera
transcript Vv15s0048g00280.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os06g04300.1 (Oryza sativa), 3'ss of exon 6
gtatacctttaaattcaaaatgaattggtccaactcctataggagttcagaatgaatcctatctgtaacagtataagagatgtagaacactactaatgctttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                         || | |   |  | ||      || ||  |||| ||| | |     ||| |      |||       ||  |   |  |  | |  |||  |||      ||||||||||||||| |||||||||||||||||||| ||  |||| || ||||| ||||| ||||| ||||| |||||||| || || || ||| | |||||
----------------------gtatgatgctgtttgtttatag--ccacaagcaatc-tatttattctcttatcaacttgctaggg----gctggtttctgatagctgaatctgtttct----cagATGGAATGAAGCTGTACATTTCAGACAACAAGGTGATTCTGACAGAGGGTTTCGATGGCGTTGTTCCTGTGAAGTACTTCGAGAAAATTGAAACATGGCC

upper sequence: Vv15s0048g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G061783_T04 (Zea mays), 3'ss of exon 4
gtatacctttaaattcaaaatgaattggtccaactcctataggagttcagaatgaatcctatctgtaacagtataagagatgtagaacactactaatgctttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                                  | |||||  |       |   |  ||  |   ||   | |      |   ||   |||   | |||  |    |  ||  | ||     | || ||| |||||||| || |||||||||||||| || |||||||| |||||||||||||| || || || || || ||||||||||   | ||| | |||||
---------------------------------gtactatataatgcttacaaataggctcccaaaaaatttctttcgttttctgagtgcta--gaggctaatataacacctaaatttgttgcgcagGTGGGATGAAGCTTTATATTTCAGACAACAAAGTGATCTTGACAGAAGGTTTTGATGGCGTCGTCCCGGTGAAATACTTTGAAAGAGTCGAAACATGGCC

upper sequence: Vv15s0048g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G092568_T02 (Zea mays), 3'ss of exon 4
gtatacctttaaattcaaaatgaattggtccaactcctataggagttcagaatgaatcctatctgtaacagtataagagatgtagaacactactaatgctttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGT------TTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                      | ||      |||  ||||    ||   |||    ||   |   || | | |      |   ||   |||   | |||  |    |  ||  | ||     | |||||| |||||||| || |||||||||||||| || |||||||| ||||||      |||||||| ||||| ||||| || ||||||||||  || ||| |      
----------------------acttaaaggtacta-tataatgcttacaaataggcccc--caaaaaaattctttcgttttctgagtgcta--gaggctgatataacacctaaatttgtcgcgcagATGGGATGAAGCTTTATATTTCAGACAACAAAGTGATCTTGACAGAAGGTTTTGGTTTTGATGGCGTTGTCCCTGTGAAATACTTTGAAAGAATCGAAAC------

upper sequence: Vv15s0048g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G092568_T01 (Zea mays), 3'ss of exon 7
gtatacctttaaattcaaaatgaattggtccaactcctataggagttcagaatgaatcctatctgtaacagtataagagatgtagaacactactaatgctttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTT------TGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                                     ||||    ||   |||    ||   |   || | | |      |   ||   |||   | |||  |    |  ||  | ||     | |||||| |||||||| || |||||||||||||| || |||||||| ||||||||      |||||| ||||| ||||| || ||||||||||  || ||| |      
-------------------------------gtactatataatgcttacaaataggcccc--caaaaaaattctttcgttttctgagtgcta--gaggctgatataacacctaaatttgtcgcgcagATGGGATGAAGCTTTATATTTCAGACAACAAAGTGATCTTGACAGAAGGTTTTGGTTTTGATGGCGTTGTCCCTGTGAAATACTTTGAAAGAATCGAAAC------

upper sequence: Vv15s0048g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G37310.1 (Glycine max), 3'ss of exon 9
------------------------------------gtatacctttaaattcaaaatgaattggtccaactcctatagga-gttcagaatgaatcctatctgtaacagtataagagatgtagaacactactaatgctttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                                    | ||  ||  || ||||   |||| || |  |  |  | | |    || | | ||| |   ||||  ||||  ||||||  |   ||   |||||      | |      | | | || | |||  ||| || |||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||
gtatgatatgacaatattccaaacatgttctgaactgaatgtctacaagttcatcttgaaatgttggattttttgttgtctattgatagtgagtaaaatctacaacaa-ataagac-tactgatagctact----tctctatatattttttcatcctatttcagAAGGTATGAAGCTTTACATTTCTGACAACAAGGTGATCTTGACGGAAGGTTTTGATGGTGTTGTTCCTGCCAAGTATTTTGAAAAGATAGAATCATGGCC

upper sequence: Vv15s0048g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G29450.1 (Glycine max), 3'ss of exon 7
gtatacctttaaattcaaaatgaattggtccaactcctatagga-gttcagaatgaatcctatctgtaacagtataagagatgtagaacactactaatgctttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                      || || |  |  |  | | |   ||| | | ||| |   ||||  ||||  ||||||  |   || | |||||      | |      | | | || | |||  |||  | || ||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||| |||   ||||| ||||||| ||||||||| |||||
----------------------aaatgttggattttttgttgtttgttgatagtgagtaaaatctacaacaa-ataagat-tactgatcgctact----tctctatatattttttcatcctatttcagAAAGTATAAAGCTTTACATTTCTGACAACAAGGTGATCTTGACGGAAGGTTTTGATGGTGTTGTTCCTCCGAAGTATTTTGAAAGGATAGAATCATGGCC

upper sequence: Vv15s0048g00280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S213_28V6.1 (Physcomitrella patens), 3'ss of exon 7
gtatacctttaaattcaaaatgaattggtccaactcctataggagttcagaatgaatcctatctgtaacagtataagagatgtagaacactactaatgctttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                      | || |||   |  ||   | |  |  |  |||  | |       |       |   |   | | ||    |    |   | |   ||  || |      || ||||||||||||||||||| ||||||| ||||| ||| |  | |||||||| |||||||| || || ||    || || ||| | ||  | |       |  
----------------------atttagtcatgcaactgccgca--ttggtgtgagccattgagcggatgaatccaatcactcaaagcatgttttgaacggatac---gtacctgaaatgtgtgcagATGGAATGAAGCTCTACGTTTCAGATAACAAAGTCGTTCTCACCGAAGGCTTTGATGGGGTGGTTCCGACTAAATATTTTAAGAATGTCGTCAAGAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagagatgtagaacactactaatgctttttccccgtctctaattcaattgtagATGGAATGAAGCTCTACATTTCAGACAACAAGGTCATCTTGACCGAAGGTTTTGATGGTGTTGTGCCTGTCAAGTACTTTGAAAAGATAGAATCTTGGCC
                          ctttttccccgtctct  CT-rich tract
                                         taattcaatt  TA-rich tract