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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatttctttaaatctacaactattgtcatattttatctaatgcatgtcatattgttaactggatggatgggaaaatcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG

Basic information

species Vitis vinifera
transcript Vv15s0046g03670.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G08110.1 (Glycine max), 3'ss of exon 7
----------------------------------------------gttcatttctttaa--atctacaact-attgtca-tattttatctaatgcatgtcatattgttaactggatggatgggaaaatcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG
                                               |  |||| ||  |  |  ||  ||| | | ||| | || | | ||     | |||  ||  ||||| ||| | || |  |||  ||||||||||||||||||||||||||||||||||||||||| ||  || | ||||  |||||||| |||||||| || ||||| ||||||
gtatggttgtttattttttcaccttttcccattgatatgcattggtttctattttttctagcacatattactgactctcaatgttctttttagattttatcaattttgtaactagattgttgtgttaatgttatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAGAAAAAGTTTTGCATGTTTAATGATGATATACAG

upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G01680.1 (Glycine max), 3'ss of exon 8
------------------------------------------------gttcatttctttaaatctacaacta--ttgtcatattttatctaatgcatgtca-tattgttaactggatggatgggaaaatcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG
                                                ||   | |  |   |  ||  |||   |    || || ||| ||    || ||| | ||  ||||| ||| | || |  |||  ||||||||||||||||||||||||||||||||||||||||| ||  || | ||||  |||| ||| |||||||| || ||||| ||||||
gtatgcttatttattttttctccttttcccattgatatgcattggtttgtatttattctagcacatattactgactcccaatgttctatttagattatatcaatttttgtaactagattgttgtgttaatgttatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAGAAAAGGTTTTGCATGTTTAATGATGATATACAG

upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G46340.1 (Glycine max), 3'ss of exon 7
--gttcatttctttaaatctacaactattgtcatattttatctaatgcatgtcatattgttaactggatggatgggaaaatcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG
   |  |||  ||| ||   |    | |  | || ||   | || |     |||| ||  ||   ||||| || |   |||  | ||||||||||||||| ||||||||||||||||||||||| ||  |||| |||||  ||| ||| |||||||| || ||||| ||||||
gtttgtattgtttttaaaacatgtttctcttaatgttcagtttagtattactcat-ttagtataaggatg-attgattaattttttcagTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAG

upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G39870.1 (Glycine max), 3'ss of exon 7
gttcatttctttaaatctacaactattgtcatattttatctaatgcatgtcatattgttaactggatggatgggaaaatcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG
|||  | |  ||   | || |||   | ||      | |  | |    || || ||  ||    |||| || ||  |||  | ||||||||||||||| ||||||||||||||||||||||| ||  |||| |||||  ||| ||| |||||||| || ||||| ||||||
gtttgtattatt---tttaaaacatgtttctctcaatgttcagtttcggt-attttagtattgagatg-attggctaattttttcagTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699592|gb|EE076724.1|EE076724
EST:     ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAG                         TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGT
genomic: ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAGgttcatttct ... atcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGT
EST: gi|110698263|gb|EE075598.1|EE075598
EST:     ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAG                         TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGT
genomic: ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAGgttcatttct ... atcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGT
EST: gi|161720282|gb|FC070543.1|FC070543
EST:     ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAG                         TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGT
genomic: ATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAGgttcatttct ... atcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttatctaatgcatgtcatattgttaactggatggatgggaaaatcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG
                       tgttaac  putative branch site (score: 2)
                   atattgttaa  TA-rich tract