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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaacttcagatccttcgaagcaaaagattgaactgtcaatttgtgtttgtggcaataaattgattgtatttggataaacatgcatcctgaaacaaacaacacaatttataatcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT

Basic information

species Vitis vinifera
transcript Vv15s0046g03520.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os04g58580.1 (Oryza sativa), 3'ss of exon 7
gtataaacttcagatccttcgaagcaaaagattgaactgtcaatt-tgtgtttgtggcaataaattgattgtatttggataaacatgcatcctgaaacaaacaacacaatttataatcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT
                                 | ||   ||||| | |       ||||||| ||| |   |||  |        ||| | ||||||    |||   | ||||  | |    || | || ||||| || || || ||||| || ||||||||||| ||||| || ||| | ||| ||||||||||||||||||| || || || ||||||
---------------------------------gtacaaacaattctttacaaagagcaataatttgttatcattcag--------gcaccatgaaact--taac-tgacttat--ttactatagGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGAT

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G165535_T05 (Zea mays), 3'ss of exon 8
gtataaacttcagatccttcgaagcaaaagattgaactgtcaatttgtgtttgtggcaataaattgattgtatttggataaacatgcatcctgaaacaaacaacacaatttataatcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT
                             |  | || |||  | |     |     |  |   ||  | | |   |    || |       ||  ||     | ||| || ||  |     ||| | || ||||| || || || ||||| || ||||||||||| |||||||| ||| | ||| ||||||||||||| ||||| || || || ||||||
-----------------------------gtataaattgtgtactaaaagtcagtaccttttcttagtaggagaggatggaataaaatctatgggac---tgaaacagttgat--ttcctgcagGTGCATAACATCCGACCTAAAATGGTGTCAGTGCTTCGTGAAAAGTTTGCACACATGAACTTGACATTTTCTATCGGAGGGCAGATTAGTTTTGAT

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G39800.1 (Glycine max), 3'ss of exon 8
-gtataaacttcagatccttcgaagcaaaagattgaactgtcaatttgtgtttgtggcaataaattgattgtatttggataaacatgcatcctgaaacaaacaacacaatttataatcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT
  |||  | ||  | |  |   |   |     | ||| | ||| |     |   |    | |  ||   |||||       ||| |  | ||| |||         |||||||   ||   |||| ||||||||||||| || || ||||||||||| |||||||||||||||||||| || ||| ||||||| || ||||||||||| ||||| ||||||
gttatgtattttggtttttatca--tattctctagaattttcact----atccatattgaaatgttaggtgtat-------aactt-taccctaaaagtt----tgcaatttaagttc---tcagGTTCACAACATACGCCCAAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCTCATCTTAACTTGACATTCTCCATTGGAGGACAGATAAGTTTTGAT

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G46390.1 (Glycine max), 3'ss of exon 8
gtataaacttcagatccttcgaagcaaaagattgaactgtcaatttgtgtttgtggcaataaattgattgtatttggat---aaacatgcatcctgaaacaaacaa--cacaatttataatcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT
                         |     ||    | | |     |  |   |    |  | |     ||||   ||   |  | |  |   | |  | || |     |||||||   ||   |||| ||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| || ||| ||||||| || ||||||||||| ||||| ||||| 
---------------------ggttatgtattttggtttttatcacattctctagaattttcactatccatattgaaatgttaggcgtataattttatgctaaaagtttgcaatttaagttc---tcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCTCATCTTAACTTGACATTCTCCATTGGAGGACAGATAAGTTTTGA-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415834|gb|EC981772.1|EC981772
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|351037054|gb|FQ465046.1|FQ465046
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|30255051|gb|CB971498.1|CB971498
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|110701264|gb|EE078642.1|EE078642
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|351014077|gb|FQ434229.1|FQ434229
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|71870941|gb|DT019996.1|DT019996
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|22015208|gb|BQ800242.1|BQ800242
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|351029490|gb|FQ436884.1|FQ436884
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|30254563|gb|CB971308.1|CB971308
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|110722626|gb|EE099031.1|EE099031
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|110689404|gb|EE065600.1|EE065600
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|294966590|gb|GW837725.1|GW837725
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCGCAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|71867011|gb|DT016066.1|DT016066
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|351052425|gb|FQ452458.1|FQ452458
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGGTGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|30253435|gb|CB970986.1|CB970986
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCCTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|110369745|gb|EC933913.1|EC933913
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|110377595|gb|EC942672.1|EC942672
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|30323265|gb|CD006527.1|CD006527
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|30296186|gb|CB972980.1|CB972980
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|110374344|gb|EC939025.1|EC939025
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|349826399|gb|FQ417896.1|FQ417896
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|349822047|gb|FQ408376.1|FQ408376
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|30253357|gb|CB970908.1|CB970908
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCCTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|351056098|gb|FQ453560.1|FQ453560
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|349808339|gb|FQ405483.1|FQ405483
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|30254481|gb|CB971226.1|CB971226
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|156736254|gb|EV240375.1|EV240375
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|110388071|gb|EC952787.1|EC952787
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|349824204|gb|FQ417591.1|FQ417591
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|37189632|gb|CF608981.1|CF608981
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGA
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGA
EST: gi|351019470|gb|FQ429605.1|FQ429605
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|27579428|gb|CB002123.1|CB002123
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|33408487|gb|CF214114.1|CF214114
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|27580564|gb|CB003259.1|CB003259
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|110384439|gb|EC948876.1|EC948876
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|351053383|gb|FQ455719.1|FQ455719
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGGTGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|77584263|gb|DV221204.1|DV221204
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|110708707|gb|EE086556.1|EE086556
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|351019263|gb|FQ429423.1|FQ429423
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|71867285|gb|DT016340.1|DT016340
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|349833445|gb|FQ420191.1|FQ420191
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|161717186|gb|FC064703.1|FC064703
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|33406828|gb|CF212455.1|CF212455
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|27579427|gb|CB002122.1|CB002122
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|110400084|gb|EC966626.1|EC966626
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|33406730|gb|CF212357.1|CF212357
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|33410547|gb|CF216174.1|CF216174
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
EST: gi|110707835|gb|EE084684.1|EE084684
EST:     GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG                         ATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT
genomic: GGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAGgtataaactt ... atcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatttggataaacatgcatcctgaaacaaacaacacaatttataatcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT
                                   acaatttataatcata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtataaacttcagatccttcgaagcaaaagattgaactgtcaatttgtgtttgtggcaataaattgattgtatttggataaacatgcatcctgaaacaaacaacacaatttataatcatatcagATTCACAACATACGTCCGAAGATGGTTTCTGTGCTTCGTGAGAAGTTTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA