Sequence
atgc intronic sequence ATGC exonic sequence...ttctccatgcgttgatcatgcttctttgttgtcagttgtcactactattactgctgcttctattcttatgttgttatcatggcaacaattctgttttcagATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G08030.1 (Glycine max), 3'ss of exon 8
--ttctccatgcgttgatcatgcttctttgttgtcagttgtcactactatta-ctgctgcttctattcttatgttgttatcatggcaacaat-tctgttttcagATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTG
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catgttaaatgc-ttgactggaagccaatgacttcacct--tacttttgtcagtcattatcatctatcttgtctttttgt-gtaataccaatctcagttttcagGTTGGTTTCCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGTGGTTGCCATTTCAGCCATAATTGCTGGTGGACGATTG
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G46420.1 (Glycine max), 3'ss of exon 16
ttctccatgcgttgatcatgcttctttgttgtcagttgt-cactactattactgctgcttctattcttatgttgttatcatggcaacaattctgt--tttcagATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTG
|| || |||| || | ||| | || | | | || ||||| || || | | | || | | | || | || | ||| | |||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||
-cttctgtg-gttgtcattgttattttttctacatgtatactctgctattgcttct-ttgttgtcctcaactcctcattagaaataccaatctatattttcagGTTGGTTTTCAAGCTATTGCTGAAGCACTTGGACTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCCATAATTGCTGGGGGACGATTG
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G01600.1 (Glycine max), 3'ss of exon 2
ttctccatgcgttgatcatgcttctttgttgtcagttgtcactactattactgctgcttctattcttatgttgttatcatg--gcaacaat-tctgttttcagATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTG
| | |||| ||||| | || ||| | ||| || | | || || | | | || | || | |||| ||||||| ||| ||||||| |||||||||||||||||||| || ||||||||||| |||||| | ||||| ||| | ||||||||||| |||||||| |||
tgttaaatgc-ttgattgaaagccaatgacttcacct--tacttctctcattgtcatcatcatctatgttgtctttttgtgaaataccaatctctgtttccagGTTGGTTTCCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTCAAGGCAGTGGTTGCTATTTCAGCCATAATTGCAGGTGGACGATTG
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G39770.1 (Glycine max), 3'ss of exon 12
-ttctccatgcgttgatcatgcttctttgttgtcagttgtcactactat-tactgctgcttctattcttatgttgttatcatggcaacaattctgttttcagATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTG
|| | | | | | | | | || | | | | | || | | | ||||| || || ||| | | ||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||| |||| |||||||| || ||||| |||
taaatcaaaaaggtcaagacacgaatatctttctaaataaagttggtccatgtaagcgcatgattggtagtgttgacataataccaat--ctatattttcagGTTGGTTTTCAAGCTATTGCTGAAGCACTTGGACTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCTATAATTGCAGGGGGACGTTTG
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 9
--ttctccatgcgttgatcatgcttctttgttgtcagttgtcactactattactgctgcttctattcttatgttgttatcatggcaacaattctgttttcagATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTG
| | | || | |||| | || | | ||| | | || | | | | | | | || |||||||||||| ||||||||||||||||||||||| || || ||||| || || ||| ||| || ||| |||| |||||||||||||| || |
ctggttgaaattgctggt-atgccagatatttctatatactcaaggaagtctaggaaatatcagtggtcgcaaaat-gctaagtttctactgctcttttcagATTGGATTTCAAGCCATTGCTGAAGCTCTTGGGCTTGCTGCAGTCAAAGCAGCAGTGGCTATTACTGCAATAATTGCTGGTGGCCGTCTA
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G00630.2 (Arabidopsis thaliana), 3'ss of exon 8
ttctccatgcgttgatcatgcttctttgttgtcagttgtcactactattactgctgcttctattcttat--gttgttatcatggcaacaatt-ctgttttcagATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTG
|||| |||| | || || | | || | || | | | || || | || | | | | | | || | || || ||||||||| ||||||||||||||||||||||| ||||| ||||| | || ||| |||||| || ||| ||||||||||||||| || |
---ctcatgtgttgctaatatttgctgtcttgcatatttctcaaggaagcctataaattattttgtaagaggagaatgctaagttgctaactacttttctcagATTGGATTTCAAGCCATTGCTGAAGCTCTTGGACTAGCTGCAATCAAAGCAGCAGTTGCTATCACTGGCATAATTGCTGGTGGCCGTCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattactgctgcttctattcttatgttgttatcatggcaacaattctgttttcagATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTG
ttctgttttc CT-rich tract
tattcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctccatgcgttgatcatgcttctttgttgtcagttgtcactactattactgctgcttctattcttatgttgttatcatggcaacaattctgttttcagATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- -tccatgc
- - - - - - - -tcatgct
- - - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaatt