Sequence
atgc intronic sequence ATGC exonic sequence...aattggagttctttaatgtggaacaaatgttattatagcctagaatttatatcagttgcatgttcttaacatacttatttttaggatgctccatatgcagGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G46620.1 (Glycine max), 3'ss of exon 5
aattggagttctttaatgtggaacaaatgt-tattatagcctagaatttatatcagttgcatgttcttaaca-tacttatttttaggatgctcc---atatgcagGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACA
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-------gtaagaaaaattgccttgacttcatagtacagcat-gttctcatgtcagtagcactttctaggcaatgattgcttacatgataatgcgtaatatacagGCACTGGCTGCAGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGCCTATTTTCTTCTTGTGGGAGATTTTAACA
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G46610.1 (Glycine max), 3'ss of exon 7
aattggagttctttaatgtggaacaaatgttattatagcctagaatttatatcagttgcatgttcttaaca-tacttatttttaggatgc----tccatatgcagGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACA-
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--taggaaaaaactactttttcttca----tagtacagtatgctactcatgtcagtagcactatcttggcaatgatttctaacgagataaagtgttaatatgcaggCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGTCTATTTTCTTCTTGTGGGGGATTTTAACAG
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G01210.1 (Glycine max), 3'ss of exon 7
aattggagttctttaatgtggaacaaatgttattatagcctagaatttatatcagttgcatgttcttaacatac-ttatttttaggatgctccatatgcagGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACA
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----gtatgatcatactgctttatcttccatattaaagcacactacccatgtcagtggaatcttttatagatatattgattactgaaaatttaatgtgcagGCTCTGGCTGCAGCTTCAAAATCTGTTGGCTCTCTTAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGGGATTTAAACA
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G01710.1 (Arabidopsis thaliana), 3'ss of exon 7
---------------------aattggagttctttaa-tgtggaacaaatgttattatagccta-gaatttatatcagttgcatgttc-------ttaacatacttatttttaggatgct----cca----tatgcagGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACA
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gtatcgcattttctctaggaaggttacattattatgtctctgtaaaccttgctgatctgattcatgtgcatatatatattgcttgttaacagtgataaccgtaaccactactaagtcacttttaccaacattttacagGCTCTTGCTGCGGCGTCAAAAACTGTTGATTTTCTCAAGGTCGTCCACAGTTTACACTCCTATTTTCTTCTCGTTGGAGATATTGACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720865|gb|FC070980.1|FC070980EST: CAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAG GCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGT
genomic: CAGATGCTCCAAAATTTGGAAAGGTTTTTGGAGGACAGTTACTTGGACAGgtaggattta ... ccatatgcagGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatatcagttgcatgttcttaacatacttatttttaggatgctccatatgcagGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACA
tcttaac putative branch site (score: 2)
ttcttaacatacttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattggagttctttaatgtggaacaaatgttattatagcctagaatttatatcagttgcatgttcttaacatacttatttttaggatgctccatatgcagGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACA
- - - - - - - - - -ggaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgct