Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaatgaattgatgatgctcatgacttgataattactttgcatcaagttccaatatatttttgataggtgcatcaagttctaataaatgaaatttcttttcaatgtgcagGTCCCTGGTGTGCCAATAATGTACATTACAAAACACCAGTATTCAATTGAGCGGTTGCCCGAAGCGACAATTGGTGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G41500.1 (Glycine max), 3'ss of exon 6
-----------------------------------------gtaaaaatgaattg--atgatgctcatgacttga---taattactttgcatcaagttccaatatatttttgataggtgcatca--agttctaataa--atgaaatttcttttcaatgtgcagGTCCCTGGTGTGCCAATAATGTACATTACAAAACACCAGTATTCAATTGAGCGGTTGCCCGAAGCGACAATTGGTGGAG
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gtaaagttattaatcatttatttgtctttcatggttttaatattggaccatattaccatgacctacgaagcatgaactgggtttctgtgttgcagATTCCTG-GTGTGCCAATTATGTACATCACCAGACCTACGAAGCATGAACTGGGTTTCTGTGTTGCAGATTCCTGGTGTGCCAATTATGTACATCACCAAACGCAAGTACTCAATTGAGCGATTGCCTGAAGCAACAATTGGTGGAG
upper sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G31740.1 (Glycine max), 3'ss of exon 8
gtaaaaatgaattgatgatgctcatgacttgataattactttgcatcaagttccaatatatttttgataggtgcatcaagttctaataaatgaaatttcttttcaatgtgcagGTCCCTGGTGTGCCAATAATGTACATTACAAAACACCAGTATTCAATTGAGCGGTTGCCCGAAGCGACAATTGGTGGAG
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--------------gtaaag-tcattattc----acttttccatctttggtttttaaatattggaccctgatgcatga---cccattatgtgg----ttttctgtat-tacagATTCCCGGTGTTCCAATAATGTACATCACCAAACGCAAGTACTCAATTGAGCGATTGCCTGAAGCAACAATTGGTGGAG
upper sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G38690.2 (Glycine max), 3'ss of exon 8
gtaaaaatgaattgatgatgctcatgacttgataatt-actttgcatcaagttccaatatatttttgataggtgcatcaagttctaataaatgaaatttcttttcaatgtgcagGTCCCTGGTGTGCCAATAATGTACATTACAAAACACCAGTATTCAATTGAGCGGTTGCCCGAAGCGACAATTGGTGGAG
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-----------------------gtaaagtcattattcacttttc--catctttgattgttttaatattggaccc--tgatgccagacccatgatctgggtttctgtattacagATTCCCGGTGTTCCAATAATGTACATCACCAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttttgataggtgcatcaagttctaataaatgaaatttcttttcaatgtgcagGTCCCTGGTGTGCCAATAATGTACATTACAAAACACCAGTATTCAATTGAGCGGTTGCCCGAAGCGACAATTGGTGGAG
ttctaat putative branch site (score: 2)
tttcttttc putative PPT
ttctaataaatgaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaatgaattgatgatgctcatgacttgataattactttgcatcaagttccaatatatttttgataggtgcatcaagttctaataaatgaaatttcttttcaatgtgcagGTCCCTGGTGTGCCAATAATGTACATTACAAAACACCAGTATTCAATTGAGCGGTTGCCCGAAGCGACAATTGGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG