Sequence
atgc intronic sequence ATGC exonic sequencegtagatgcttcaaacactcatgttgcttctttggactgagcttagctattgttaatattgaaggtaacagattatggctgttttctttttacagGTTCGCCCTGCCTCTGCCAGTATTTCTTCTGGCTCACCTGACAAGATTCAGTTGTCTCGCACTGAGCTCTGGACAAAAGATGTTATTGATTACTTGCAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G46700.1 (Glycine max), 3'ss of exon 2
gtagatgcttcaaacactcatgttgcttctttggactgagcttagc--tattgttaatattgaaggtaacagattatggctgttttctttttacagGTTCGCCCTGCCTCTGCCAGTATTTCTTCTGGCTCACCTGACAAGATTCAGTTGTCTCGCACTGAGCTCTGGACAAAAGATGTTATTGATTACTTGCAGG
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----gtaatttacctgtttattttaccc---tgaagtgaccctcccccttttctcaatatttaagata---gattatggttgatt-------gcagGTTCGGCCAGGCTCTGCTAGTATTCCTTCTGGGACTGCTGACAAAACTCAGCTGTCTTGTTCTGAGCTTTGGACAAAAGATGTTATTGAATACTTGCAAA
upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G01150.1 (Glycine max), 3'ss of exon 4
--gtagatgcttcaaacactcatgttgcttctttggactgagcttagctattgttaatattgaaggtaacagattatggctgttttctttttacagGTTCGCCCTGCCTCTGCCAGTATTTCTTCTGGCTCACCTGACAAGATTCAGTTGTCTCGCACTGAGCTCTGGACAAAAGATGTTATTGATTACTTGCAGG
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gtagggatgcttcag-cgttgctatatttacctaatatgatgaattgct--taatatcttttaatattgtagattatgattgacctttt----cagGTTCGACCTGGTTCTGTTGGTATTTCTTCTGGGGCAGCTGACAAGATTCAGCTGTCTCGCTCTGATGTTTGGACCAAAGATGTTATCAATTACTTACAAA
upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G39550.1 (Glycine max), 3'ss of exon 2
gtagatgcttcaaacactcatgttgcttctttggactgagcttagc-tattgttaatattgaaggtaacagattatggctgttttctttttacagGTTCGCCCTGCCTCTGCCAGTATTTCTTCTGGCTCACCTGACAAGATTCAGTTGTCTCGCACTGAGCTCTGGACAAAAGATGTTATTGATTACTTGCAGG
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----gtaatttacctgtttattttac--cctgaaatcaccctcccccttttctcaatatttaagata---gattatggttgaatt----ttgcagGTTCGGCTGGGTTCTGCTAGTATTCCTTCTGGGACTGCTGACAAAACTCAGCTGTCTTGTTCTGAGCTTTGGACAAAAGATGTTATTGAGTACTTGCAAA
upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G07710.1 (Glycine max), 3'ss of exon 1
--gtagatgcttcaa-acactcatgttgcttctttggactgagcttagctattgttaatattgaaggtaacagattatggctgttttctttttacagGTTCGCCCTGCCTCTGCCAGTATTTCTTCTGGCTCACCTGACAAGATTCAGTTGTCTCGCACTGAGCTCTGGACAAAAGATGTTATTGATTACTTGCAGG
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gtagggatgcttcagtgttggtatatttaccaattatgatgaatt--gct-ttatattttttaatatttgtagattatgattggcttttt----cagGTTCGACCTGGTTCTGTTGGTATTTCTTCTGGGGCTGCTGACAAGATTCAGCTGTCTCGCTCTGATGTTTGGACCAAAGATGTTATCAATTACTTACAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcttagctattgttaatattgaaggtaacagattatggctgttttctttttacagGTTCGCCCTGCCTCTGCCAGTATTTCTTCTGGCTCACCTGACAAGATTCAGTTGTCTCGCACTGAGCTCTGGACAAAAGATGTTATTGATTACTTGCAGG
aggtaac putative branch site (score: 3)
ctgttttctttttac putative PPT
tattgttaatattgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagatgcttcaaacactcatgttgcttctttggactgagcttagctattgttaatattgaaggtaacagattatggctgttttctttttacagGTTCGCCCTGCCTCTGCCAGTATTTCTTCTGGCTCACCTGACAAGATTCAGTTGTCTCGCACTGAGCTCTGGACAAAAGATGTTATTGATTACTTGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG