Sequence
atgc intronic sequence ATGC exonic sequence...aatagacccacggtaatgagttcatagttatactttcgttccttgaaaaaagatcctgtgtgtattgcttatttttgtgcatatgcttttatcgaagcagGGAGGTGGAGGATTTTGAACGCATATTGAATTCAGACTGGCCAGAAAGAATGCAAGAGATTCTATCTTTGGGGCGAGAAAGGAAGCCCATAAATGGGAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02450.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G01090.2 (Glycine max), 3'ss of exon 8
--aatagacccacggtaatgagttcatagttatactttcgttccttgaaaaaagatcctgtg-tgtattgcttatttttgtgcatatgct-tttatcgaagcagGGAGGTGGAGGATTTTGAACGCATATTGAATTCAGACTGGCCAGAAAGAATGCAAGAGATTCTATCTTTGGGGCGAGAAAGGAAGCCCATAAATGGGAAT
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tatataaagagatgtttgcatggtagt--ttacactagagtgcttttaagat-gatggtatgatgcacc-ctgaaatttatttccacggtaccttttgatgcagGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAAAGAATGCAAGAACTTTTATCTTCAGGGCAAGAACGGGAGACAATACTTTTTACT
upper sequence: Vv15s0046g02450.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G07600.1 (Glycine max), 3'ss of exon 8
aatagacccacggtaatgagttcatagttatactttcgttccttgaaaa--aagatcctgtgtgtattgcttatttttgtgcatatgcttttatcgaagcagGGAGGTGGAGGATTTTGAACGCATATTGAATTCAGACTGGCCAGAAAGAATGCAAGAGATTCTATCTTTGGGGCGAGAAAGGAAGCCCATAAATGGGAAT
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gatataaaga-gatggttgcatggtagttacactagagtgcttttaagatgatggtatgatgcaccctaatattttatttgggtg-gtaccttttgatgcagGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAAAGAATGCAAGAACTTTTATCTTCAGGGCAAGAACGGAAGACAATGCTTTTTACT
upper sequence: Vv15s0046g02450.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G39480.1 (Glycine max), 3'ss of exon 8
--------aatagacccacggtaatgagttcatagttatactttcgttccttgaaaaaagatcctgtgtgtattgcttatttttgtgcatatgcttttatc-gaagcagGGAGGTGGAGGATTTTGAACGCATATTGAATTCAGACTGGCCAGAAAGAATGCAAGAGATTCTATCTTTGGGGCGAGAAAGGAAGCCCATAAATGGGAAT
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atgatatataccgaatcttttttgcttggtgatggttatataaatgtacttttaa----gatgatgaatggaa-----aatcttgtctgcttggttccatttgacacagGGAAGTGGAAGATTTTGCCCGCCGATTGAATTCTGACTGGCCAGAAAGGATGCAAGAACTTCTATCATCAGGACAAGAAAGGAAGACAATACTTTTTACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaaagatcctgtgtgtattgcttatttttgtgcatatgcttttatcgaagcagGGAGGTGGAGGATTTTGAACGCATATTGAATTCAGACTGGCCAGAAAGAATGCAAGAGATTCTATCTTTGGGGCGAGAAAGGAAGCCCATAAATGGGAAT
cttttatc CT-rich tract
tattgcttattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatagacccacggtaatgagttcatagttatactttcgttccttgaaaaaagatcctgtgtgtattgcttatttttgtgcatatgcttttatcgaagcagGGAGGTGGAGGATTTTGAACGCATATTGAATTCAGACTGGCCAGAAAGAATGCAAGAGATTCTATCTTTGGGGCGAGAAAGGAAGCCCATAAATGGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - cccacgg
- - - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgc