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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaattttttccacttacatctgattcttctgaatgctattctgaatttcactggggtgaaatgttttaaattttaatcaatgcagAGGAAGTTGCTCTCATCTTATGATGCTGACTTTGAGAAGGCTAAATCCAGCAGCACTCGCAGTATTCTCCATGTTGGTAAATCAGAGAGTGCTATTCTAT

Basic information

species Vitis vinifera
transcript Vv15s0046g02260.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033032|gb|FQ446385.1|FQ446385
EST:     TGATGAGAAACCTTACAATCAATTTAACAAGCCCTGAATTTGCAGATCAT                         AGGAAGTTGCTCTCATCTTATGATGCTGACTTTGAGAAGGCTAAATCCAGC
genomic: TGATGAGAAACCTTACAATCAATTTAACAAGCCCTGAATTTGCAGATCATgtaagtaatt ... atcaatgcagAGGAAGTTGCTCTCATCTTATGATGCTGACTTTGAGAAGGCTAAATCCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatgctattctgaatttcactggggtgaaatgttttaaattttaatcaatgcagAGGAAGTTGCTCTCATCTTATGATGCTGACTTTGAGAAGGCTAAATCCAGCAGCACTCGCAGTATTCTCCATGTTGGTAAATCAGAGAGTGCTATTCTAT
                                        ttttaat  putative branch site (score: 3)
                          tgaaatgttttaaatt  TA-rich tract