Sequence
atgc intronic sequence ATGC exonic sequence...tataaggttcatgaggcaaagagccttacatgtattgatagactttctattcctttctaaataatgtagtactaacatttagttttttacttttccatagAACTGGAGAACAGATTGCTGTCTCGATTTGATGCAGCATCACAGAGAAGAGAACTGTCTACCATGTCAGAATGTGCTAAGATTTTATCTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G01660.1 (Glycine max), 3'ss of exon 7
tataaggttcatgaggcaaagagccttacatgtattgatagactttctattcctt--tctaaataatgtagtactaacatttagttttttact-tttccatagAACTGGAGAACAGATTGCTGTCTCGATTTGATGCAGCATCACAGAGAAGAGAACTGTCTACCATGTCAGAATGTGCTAAGATTTTATCTCAG
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--taagactaaaatatttagttgcagtccatgaat-gttaaaactctgacttcttggtttctttagtaataaatgtttgattattcttttaccatttctgcagAACTGGAGAATAGATTGCTTTCTCGGTTTGATGCAGCATCACAGAAAAGAGAATTGACCACAATGGCAGAATGTGCCAAAATTTTGTCTCAG
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G05160.1 (Glycine max), 3'ss of exon 7
tataaggttcatgaggcaaagagccttacatgtattgatagactttctattcctttctaaataatgtagtactaacatttagttttttact-tttccatagAACTGGAGAACAGATTGCTGTCTCGATTTGATGCAGCATCACAGAGAAGAGAACTGTCTACCATGTCAGAATGTGCTAAGATTTTATCTCAG
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ggtatgaccaaaataattagttgcagcccatgaat-gttaaaaccctgacttcttggtttctctagtaacatgtttgattattctttcaccatttctgcagAACTGGAGAATAGATTGCTTTCTCGGTTTGACGCAGCATCACAGAAAAGAGAATTGACCACAATGGCAGAATGTGCCAAAATTTTGTCTCAG
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G12370.1 (Arabidopsis thaliana), 3'ss of exon 8
-tataaggttcatgaggcaaagagccttacatgtattgatagacttt--ctattcctttctaaataatgtagtactaacatttagttttttacttttccatagAACTGGAGAACAGATTGCTGTCTCGATTTGATGCAGCATCACAGAGAAGAGAACTGTCTACCATGTCAGAATGTGCTAAGATTTTATCTCAG
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gtaaactaattcgtttatactgtgttttctgtatatttactgaagaggattattgtatgttcaactttttctttgtgacatttgagt----atgatgctgtagAATTGGAGAACAGGCTTTTATCTCGTTTTGATGCTGCATCACAGCGGAGAGATTTATCAACCATGTCAGAATGCGCTAAGATTTTGTCACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161709184|gb|FC057959.1|FC057959EST: AAGCAGAGGCTTAGAAGTTGCTGTTGCTAACCTTCAGGATTACTGTAATG AACTGGAGAACAGATTGCTGTCTCGATTTGATGCAGCATCACAGAGAAGAG
genomic: AAGCAGAGGCTTAGAAGTTGCTGTTGCTAACCTTCAGGATTACTGTAATGgtatgttaat ... ttttccatagAACTGGAGAACAGATTGCTGTCTCGATTTGATGCAGCATCACAGAGAAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctattcctttctaaataatgtagtactaacatttagttttttacttttccatagAACTGGAGAACAGATTGCTGTCTCGATTTGATGCAGCATCACAGAGAAGAGAACTGTCTACCATGTCAGAATGTGCTAAGATTTTATCTCAG
tactaac putative branch site (score: 0)
ttttttacttttccat putative PPT
taacatttagtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tataaggttcatgaggcaaagagccttacatgtattgatagactttctattcctttctaaataatgtagtactaacatttagttttttacttttccatagAACTGGAGAACAGATTGCTGTCTCGATTTGATGCAGCATCACAGAGAAGAGAACTGTCTACCATGTCAGAATGTGCTAAGATTTTATCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - tcatgag
- - - - - - - - caaagag
- - - - - - - - - - - -ccttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataat