Sequence
atgc intronic sequence ATGC exonic sequence...taaggatgcagttttagtagcgtctatggttttaatacagaggattctgtaccttctttagattgatatgttatgttttacttatttagttctattacagGTATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTACTTGGTCGGAAAACCTTGCTTGCCAAGCCCATGGTGATGGATGTCTATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 7
taaggatgcagttttagtagcgtctatggttttaatacagaggattctgtaccttc-tttagattgatat--gttatgttttac-ttatttagttctattacagGTATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTACTTGGTCGGAAAACCTTGCTTGCCAAGCCCATGGTGATGGATGTCTATCAG
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-taggtctcattaaaattatagtttctgactttc---tgtagcattctgcactgccatttcgttctacatccatggtctcttaggtctccttgttttatctcagGTATGAATTGCTCTTTTACCCAAGATATCACCTTGATCAAAGCTCATTACTCTGTCGAAAACCATTGCTTGCTAAACCAATGGTGATGGATGTGTACCAA
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 7
taaggatgcagttttagtagcgtctatggttttaatacagaggattctgtaccttc-tttagattgatat--gttatgttttac-ttatttagttctattacagGTATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTACTTGGTCGGAAAACCTTGCTTGCCAAGCCCATGGTGATGGATGTCTATCAG
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taggtgt-catcaaaattatagtttctgactttc---tgtagcattatgcaccaccatttcgatctacatctgtggtctcttaggtctccttgttttatctcagTTATGAATTGCTCTTTTACCCAAGATATCACCTTGATCAAAGCTCATTACTCTGTCGAAAACCGTTGCTTGCTAAACCAATGGTGATGGATGTGTACCTA
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G61480.1 (Arabidopsis thaliana), 3'ss of exon 7
taaggatgcagttttagtagcgtctatggttttaatacagaggattctgtaccttctttagattgatat-gttatgttttacttatttagtt-----ctattacagGTATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTACTTGGTCGGAAAACCTTGCTTGCCAAGCCCATGGTGATGGATGTCTATCAG
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------tactcttccagacttttttacattaatgtgataaacgtttctgagcattttgtctttgaatgttgtttaatttcacgtgtatgttcgctaattattgcagATATGAGCTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCTTTACTTTGTCGTAAAGTGCTGCTTGGCAAACCAATGGTGATGGATGTTTACCAG
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 7
taaggatgcagttttagtagcgtctatggttttaatacagaggattctgtaccttctttagattgatat-gttatgttttacttatttagtt-----ctattacagGTATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTACTTGGTCGGAAAACCTTGCTTGCCAAGCCCATGGTGATGGATGTCTATCAG
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------aactcttccagacttttttacatgaatgtgataaacgtttctgagcattttgtctttgaatgttgtttaatttcacgtgtatgttcgctaattattgcagATATGAGCTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCTTTACTTTGTCGTAAAGTGCTGCTTGGCAAACCAATGGTGATGGATGTTTACCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgtaccttctttagattgatatgttatgttttacttatttagttctattacagGTATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTACTTGGTCGGAAAACCTTGCTTGCCAAGCCCATGGTGATGGATGTCTATCAG
gattgat putative branch site (score: 4)
ttctatt putative PPT
attgatatgttatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaggatgcagttttagtagcgtctatggttttaatacagaggattctgtaccttctttagattgatatgttatgttttacttatttagttctattacagGTATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTACTTGGTCGGAAAACCTTGCTTGCCAAGCCCATGGTGATGGATGTCTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- -ggatgca
- - - - - - - - - - - - - - - - - atacaga