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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcatttctaaatctcctttatacttttgtcttagatttcagctacaatgccttatagtcctttgtttccctttagGTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGATCACCTAAAGCCAGTTCTTTATACAGAAAACAGCACCATTCTCCGTGAGG

Basic information

species Vitis vinifera
transcript Vv15s0046g00980.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g00980.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G06220.1 (Glycine max), 3'ss of exon 6
---------gtaagttcatttctaaatctcctttatacttttgtcttagatttcagctacaatgccttatagt----------cctttgtttccctttagGTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGATCACCTAAAGCCAGTTCTTTATACAGAAAACAGCACCATTCTCCGTGAGG
         |||  |   |||    || | |||| | ||| |  ||     | |  |||       || || |          ||||  | |  || |||||||||||||| || || ||||| |  ||  |||||||||||||||||||| | || |||||||| ||||| || || || ||   |||  | ||||| |
taagtaactgtatctaagttttgttattttctttttccttctacctatacatacttctatgtgtatttgtaatgagaattttaccttcttcttgctctagGTGCCAATGTTTGAGAACATGGATAATCAGTTGTTGGATGCACTGTGTGATAAACTGAAGCCAGTCCTTTACACGGAGAAAAGTTACATAGTTCGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18458080|gb|BM436358.1|BM436358
EST:     CTGGAATCTGCTAATGAGA                         GTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGAT
genomic: CTGGAATCTGCTAATGAGAgtaagttcat ... ttccctttagGTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGAT
EST: gi|110711239|gb|EE087524.1|EE087524
EST:     ACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGA                         GTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGAT
genomic: ACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGAgtaagttcat ... ttccctttagGTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGAT
EST: gi|30251738|gb|CB969471.1|CB969471
EST:     ACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGA                         GTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGAT
genomic: ACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGAgtaagttcat ... ttccctttagGTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttttgtcttagatttcagctacaatgccttatagtcctttgtttccctttagGTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGATCACCTAAAGCCAGTTCTTTATACAGAAAACAGCACCATTCTCCGTGAGG
                                     tcctttgtttcccttt  CT-rich tract
          ttagattt  TA-rich tract