1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagttcatcaatgccattgttatgtggtaatgttaaaatgtaaaatgtttctattttcaaatgtaaatccattatatgcacttgaattcattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCAAAATCAGATTTGGATTCTCTGTTTTGGGTTGAAAGAGACTCTTATGCTT
species | Vitis vinifera |
transcript | Vv15s0024g00050.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG ATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCAEST: gi|122691575|gb|EC980636.1|EC980636
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
EST: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG ATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCAEST: gi|122691305|gb|EC972404.1|EC972404
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
EST: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG ATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCAEST: gi|111125106|gb|EE253724.1|EE253724
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
EST: GGCATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG ATACCTGTGGAAAGGATTTTATTGGAGTCGGATGCGCCTGATGCTCTACCAEST: gi|110376873|gb|EC941950.1|EC941950
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
EST: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG ATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCAEST: gi|110394067|gb|EC958495.1|EC958495
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
EST: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACG ATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
genomic: GGTATCTTATGTCCATGAAAGAACAGAAGGCAAAGAAAATGTTAAGGACGgttagttcat ... cattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCA
aatgtttctattttcaaatgtaaatccattatatgcacttgaattcattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCAAAATCAGATTTGGATTCTCTGTTTTGGGTTGAAAGAGACTCTTATGCTT
ttcatttt CT-rich tract
tattttcaaatgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttcatcaatgccattgttatgtggtaatgttaaaatgtaaaatgtttctattttcaaatgtaaatccattatatgcacttgaattcattttgtagATACCTGTGGAAAGGATTTTATTGGAGTCAGATGCACCTGATGCTCTACCAAAATCAGATTTGGATTCTCTGTTTTGGGTTGAAAGAGACTCTTATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA