Sequence
atgc intronic sequence ATGC exonic sequencegtacaatttcaattttgtttggttttatttttattttaatgtgtgtacaaggctcttatttatgcattaatggagtgttatatgttgatctaaaccatatattactgaactcgtcctaacttttatttttgttaatgaagAATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACACAGGCAAAAAGATAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G14800.1 (Glycine max), 3'ss of exon 2
gtacaatttcaattttgtttggttttatttttattttaatgtgtgtacaaggctcttatttatgcattaatggagtgttatatgttgatctaaaccatatattactga-actcgtcctaacttttatttttgttaatgaagAATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACACAGGCAAAAAGATAAAG
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gta-atcctcaccttaggaggctgttaatcccatttgaaaccatttttca---tcttttttatatgttgatcttctattttgaatatgt-taacctacattacacaaacacataagctaatggctgttttt-tggctgaagAATTTACGAGGGTGTGATTCGGAAGGGTGATTTTATTATTAATGTAAACACTGGCAAGAAGATCAAG
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G16460.1 (Glycine max), 3'ss of exon 7
gtacaatttcaattttgtttggttttatttttattttaatgtgtgtacaaggctcttatttatgcattaatggagtgttat--atgttgatctaaaccatatat-tactgaactcgtcctaacttttatttttgttaatgaagAATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACACAGGCAAAAAGATAAAG
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gtacc-cctcaccataggaggctgttaatcccatttgaaaccgtttttca---tcatttatatatattgatcttttgttttgaatgttagcctacattacacaaatacataagctaa--tggtttttttttttttggctgaagAATTTACGAGGGTGTGATTCGGAAGGGTGATTTTATTATTAATGTAAACACTAGCAAGAAGATCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71863690|gb|DT012745.1|DT012745EST: TTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAG AATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACAC
genomic: TTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAGgtacaatttc ... gttaatgaagAATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatctaaaccatatattactgaactcgtcctaacttttatttttgttaatgaagAATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACACAGGCAAAAAGATAAAG
cttttatttttgtt CT-rich tract
taacttttatttttgt TA-rich tract