Sequence
atgc intronic sequence ATGC exonic sequence...ttgaaatgtgcagacatataaaaatgagttattcaaatgctgggatatgttggtcgattgtcttacttacgttgtggcagaagttacacactgtaagcagGCCGACATTGACTTCCGAGGGCACGAGGAGATCTACTCTGAACCTGGTGGAGTGATGGACTACGAGGAAGATCGAAGCCGACCCAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g01580.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G171745_T02 (Zea mays), 3'ss of exon 7
---ttgaaatgtgcagacatataaaaatgagttattcaaatgctgggatatgttggtcgattgtcttacttacgttgtggcagaagttacacactgtaagcagGCCGACATTGACTTCCGAGGGCACGAGGAGATCTACTCTGAACCTGGTGGAGTGATGGACTACGAGGAAGATCGAAGCCGACCCAAGAG
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ttattattatttttcagtgttcatataatggcagctactgtattaaatagtgttgccgaaccatgtttcttacttgatggcagaagttaaacaatttaagCAGGCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGAATAATGGATTTTGAAGAGGACCGCGTCCGACCAAAAAG
upper sequence: Vv15s0021g01580.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G171745_T05 (Zea mays), 3'ss of exon 6
--------------------ttgaaatgtgcagacatataaaaatgagttattcaaatgctgggatatgttggtcgattgtcttacttacgttgtggcagaagttacacactgtaagcagGCCGACATTGACTTCCGAGGGCACGAGGAGATCTACTCTGAACCTGGTGGAGTGATGGACTACGAGGAAGATCGAAGCCGACCCAAGAG
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ctgccttctgtttagatttattattatttttcagtgttcatataatggcagctactgtattaaatagtgttgccgaaccatgtttcttacttgatggcagAAGTTAAACAATTTAAGCAGGCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGAATAATGGATTTTGAAGAGGACCGCGTCCG---------
upper sequence: Vv15s0021g01580.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G171745_T04 (Zea mays), 3'ss of exon 7
ttgaaatgtgcagacatataaaaatgagttattcaaatgctgggatatgttggtcgattgtcttacttacgttgtggcagaagttacacactgtaagcagGCCGACATTGACTTCCGAGGGCACGAGGAGATCTACTCTGAACCTGGTGGAGTGATGGACTACGAGGAAGATCGAAGCCGACCCAAGAG
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ttattatttttcagtgttcatataatggcagctactgtattaaatagtgttgccgaaccatgtttcttacttgatggcagaagttaaacaatttaagcagGCAGACATTGACTTACGGGGGCATGACGAGTTTCTCTCTGAATCTGGAGGAATAATGGATTTTGAAGAGGACCGCGTCCGACCAAAAAG
upper sequence: Vv15s0021g01580.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G25690.1 (Glycine max), 3'ss of exon 7
ttgaaatgtgcagacatataaaaatgagttattcaaatgctgggatatgttggtcgat-tgtcttacttacgttgtggcagaagttacacactgtaagcagGCCGACATTGACTTCCGAGGGCACGAGGAGATCTACTCTGAACCTGGTGGAGTGATGGACTACGAGGAAGATCGAAGCCGACCCAAGAG
|| | | || ||||| || | | | ||| |||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||| |||||||||||||||| || || ||||||||||||||||| |||||
-ctaattatacacacatagttgcctgctgttctttatgcttggaatatattggtcgacgtgtcttacttacttcgtggcagaagttacacactgtaagcagGCCGACATCGACTTCAGAGGGCATGAGGAGATCTGCTCTGAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAG
upper sequence: Vv15s0021g01580.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G25690.2 (Glycine max), 3'ss of exon 7
----------------ttgaa-atgtgcagacatataaaaatgagttattcaa-atgct-gggatatgttggtcgat-tgtcttacttacgttgtggcagaagttacacactgtaagcagGCCGACATTGACTTCCGAGGGCACGAGGAGATCTACTCTGAACCTGGTGGAGTGATGGACTACGAGGAAGATCGAAGCCGACCCAAGAG
||| | | | ||| ||| | | ||| ||||| || |||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||| |||||||||||||||| || || ||||||||||||||
gataatataaaagtatctgactaattatacacacatagttgcctgctgttctttatgcttggaatatattggtcgacgtgtcttacttacttcgtggcagAAGTTACACACTGTAAGCAGGCCGACATCGACTTCAGAGGGCATGAGGAGATCTGCTCTGAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCG---------
upper sequence: Vv15s0021g01580.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G35760.1 (Glycine max), 3'ss of exon 7
ttgaaatgtgcagacatataaaaatgagttattca--aatgctgggatatgttggtcgat-tgtcttacttacgttgtggcagaagttacacactgtaagcagGCCGACATTGACTTCCGAGGGCACGAGGAGATCTACTCTGAACCTGGTGGAGTGATGGACTACGAGGAAGATCGAAGCCGACCCAAGAG
|| | | | ||| |||| | | ||| | | ||| |||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| |||| || |||||||||| ||||||| |||||||||||||||| || || |||||||||||||| || |||||
---aattatatacacacataattgcctgctgttctttatggttggaatatattggtcgacgtgtcttacttacttcgtggcagaagttacacactgtaagcagGCCGACATCGACTTCAGAGGCCATGAGGAGATCTGCTCTGAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGTCCAAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgttggtcgattgtcttacttacgttgtggcagaagttacacactgtaagcagGCCGACATTGACTTCCGAGGGCACGAGGAGATCTACTCTGAACCTGGTGGAGTGATGGACTACGAGGAAGATCGAAGCCGACCCAAGAG
tacttac putative branch site (score: 1)
ttactta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgaaatgtgcagacatataaaaatgagttattcaaatgctgggatatgttggtcgattgtcttacttacgttgtggcagaagttacacactgtaagcagGCCGACATTGACTTCCGAGGGCACGAGGAGATCTACTCTGAACCTGGTGGAGTGATGGACTACGAGGAAGATCGAAGCCGACCCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - -gcagaca
- - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - -caaatgc
- - - - - - - - - - - - - - - - - - - - - - - -tgttggt