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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttaatataaatggaaaaatgttattaaaatttgaatggtgcttcatatatgtatccctacttcatcacctacttatatcactagcaaaaactaacttttttaattaatgtcaaacaacaactaccgttttacctgttcaatcctagttttgatttatattggaatacaattgaaataattcttagGTGGCTACTTTCCATGAGGAAGAGTACGCGAAGATCAATATGAAGCTGAACACCAAATTGGGAGGCAAATTGGCTCTTTCAAAAAATTATGCTCATAAG

Basic information

species Vitis vinifera
transcript Vv15s0021g00050.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351039203|gb|FQ457878.1|FQ457878
EST:     CCAAGGTTGCTTATTTCACAGCCCTTGCTTTGTGCCAAAAGGGCATCCAG                         GTGGCTACTTTCCATGAGGAAGAGTACGCGAAGATCAATATGAAGCTGAAC
genomic: CCAAGGTTGCTTATTTCACAGCCCTTGCTTTGTGCCAAAAGGGCATCCAGgtatttttaa ... taattcttagGTGGCTACTTTCCATGAGGAAGAGTACGCGAAGATCAATATGAAGCTGAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctgttcaatcctagttttgatttatattggaatacaattgaaataattcttagGTGGCTACTTTCCATGAGGAAGAGTACGCGAAGATCAATATGAAGCTGAACACCAAATTGGGAGGCAAATTGGCTCTTTCAAAAAATTATGCTCATAAG
                ttttgat  putative branch site (score: 4)
                                                ttctt  putative PPT
                ttttgatttatattgg  TA-rich tract