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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcttcttgttctgtttcaaccgaattaagtaaatgaaagtcacatatttaggcagatacttatgttgcatttgctttttggggaaaaaccttttgcagGTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTATCCTGGGAAGAAAGCGGGTAAATGTCCTAAACTTGGTGAGGAAAGCACGG

Basic information

species Vitis vinifera
transcript Vv14s0219g00120.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723575|gb|EE101045.1|EE101045
EST:     ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG                         GTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTAT
genomic: ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaatt ... ccttttgcagGTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTAT
EST: gi|110699274|gb|EE076127.1|EE076127
EST:     TCT-GGGTGAACTTCTATGGNAATATAGGAAAAGCTCT-GCTATNCTT-G                         GNATCTGGCTTCTTTGAC-TCATCTTCATCTGCCCACACTAC-TGCTCTA
genomic: -CTTGGGTGAACTTCTATGGAAATATAGGAAA-GCTCTTGCTAT-CTTTGgtatggaatt ... ccttttgcagGTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTA
EST: gi|110696243|gb|EE075180.1|EE075180
EST:     ATTCTTGGGTGAACTTCTAAGGAAATATAAGAAAGCTCTTGCTATCCTTG                         GTAACCGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCT
genomic: ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaatt ... ccttttgcagGTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCT
EST: gi|110724366|gb|EE100141.1|EE100141
EST:     ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG                         GTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTAT
genomic: ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaatt ... ccttttgcagGTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttaggcagatacttatgttgcatttgctttttggggaaaaaccttttgcagGTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTATCCTGGGAAGAAAGCGGGTAAATGTCCTAAACTTGGTGAGGAAAGCACGG
                                             ccttttgc  CT-rich tract
            atacttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttcttcttgttctgtttcaaccgaattaagtaaatgaaagtcacatatttaggcagatacttatgttgcatttgctttttggggaaaaaccttttgcagGTATCTGTCTTCTTTGACCTCATCTTCATCTGCCAACACTACCTGCTCTATCCTGGGAAGAAAGCGGGTAAATGTCCTAAACTTGGTGAGGAAAGCACGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- -cttcttg
- - - - - - - - ttcaacc
- - - - - - - - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaa