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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catggacctcaatttcttatgttttacatcctttgactaaggttctataggaactggattgtttgatcattctcttggttgattattttcatatgcacagAAGCGGACAAGTGTTTTCTACCTCTGTATTTCCATATTGACTCTGATGTTGCTGCCACTTTTCTACTTCTTTGTTTATTTGTACCAGAG

Basic information

species Vitis vinifera
transcript Vv14s0219g00070.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110701049|gb|EE078238.1|EE078238
EST:     ATGCCCACACTTGCACTGGAGGCCAGAAGCCCTTCTCAAGAGGGCGCAAG                         AAGCGGACAAGTGTATTCTACCTCTGTATTTCCATATTGACTTTGATGTTG
genomic: ATGCCCACACTTGCACTGGAGGCCGGAAGCCCTTCTCAAGAGGGCGCAAGgtaagtgcgc ... atatgcacagAAGCGGACAAGTGTTTTCTACCTCTGTATTTCCATATTGACTCTGATGTTG
EST: gi|110396110|gb|EC961786.1|EC961786
EST:     ATGCCCACACTTGCACTGGAGGCCGGAAGCCCTTCTCAAGAGGGCGCAAG                         AAGCGGACAAGTGTTTTCTACCTCTGTATTTCCATATTGACTCTGATGTTG
genomic: ATGCCCACACTTGCACTGGAGGCCGGAAGCCCTTCTCAAGAGGGCGCAAGgtaagtgcgc ... atatgcacagAAGCGGACAAGTGTTTTCTACCTCTGTATTTCCATATTGACTCTGATGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataggaactggattgtttgatcattctcttggttgattattttcatatgcacagAAGCGGACAAGTGTTTTCTACCTCTGTATTTCCATATTGACTCTGATGTTGCTGCCACTTTTCTACTTCTTTGTTTATTTGTACCAGAG
                               ggttgat  putative branch site (score: 5)
                                        ttttcat  putative PPT
                                 ttgattattttcatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catggacctcaatttcttatgttttacatcctttgactaaggttctataggaactggattgtttgatcattctcttggttgattattttcatatgcacagAAGCGGACAAGTGTTTTCTACCTCTGTATTTCCATATTGACTCTGATGTTGCTGCCACTTTTCTACTTCTTTGTTTATTTGTACCAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - -acctcaa
- - - - - - - - - - - - - catcctt
- - - - - - - - - - - - - - - - - - - - - - - ataggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tggattg