Sequence
atgc intronic sequence ATGC exonic sequencegtaatacttgagtcctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcagGCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCTCAAAGAAATGGAAAACTAACAGTGCAAAAATTTCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0171g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os12g13460.1 (Oryza sativa), 3'ss of exon 7
gtaatacttgagtcctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataa-ctttat--aatctctgtttcagGCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCTCAAAGAAATGGAAAACTAACAGTGCAAAAATTTCAT
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----------------------------gtggaatttgttttgctattgttctacattcatcttcttattggatttgtgtaagcaatactgaatcattgttacagGCATCCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTGCTCAAAGAAATGGGAAGCTGGCTATCCAAAATTTCCAT
upper sequence: Vv14s0171g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G047695_T01 (Zea mays), 3'ss of exon 7
gtaatacttgagtcctacccttttttatacaaaat-tttactgtttgctcttttgggtgaactcttcctttttattgatataactttat---aatctctgtttcagGCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCTCAAAGAAATGGAAAACTAACAGTGCAAAAATTTCAT
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--------------------------gtagataatcttcattatgcagcagtcttg------tttactgtgcggttggtataactctgtttgaatcactattacagGCATCTTTAAATACAGAAGATCCTCAATACCAAGAAAAGAGAATGGTTGCTCAGAGGAATGGAAAACTTGCTATCCAAAATTTTAAT
upper sequence: Vv14s0171g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G302195_T03 (Zea mays), 3'ss of exon 2
gtaatacttgagtcctacccttttttatacaaaattttactgtttgctcttttg-ggtgaactcttcctttttattgatataact-ttataatctctgtttcagGCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCTCAAAGAAATGGAAAACTAACAGTGCAAAAATTTCAT
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----------------------------gtaga----cattctttattatgcagcaatctcctttactgtgtggttggtgtaactgtttgaatcactgttacagGCATCTTTAAATACAGAAGATCCTCAATACCAAGAAAAGAGAATGGTTGCTCAGAGGAATGGAAAGCATGCTATCCAAAATTTTAAT
upper sequence: Vv14s0171g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G22520.1 (Glycine max), 3'ss of exon 7
gtaa-tacttgagtcctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcagGCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCTCAAAGAAATGGAAAACTAACAGTGCAAAAATTTCAT
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gtaaatgttggacatttactttgttttattcagtattttgttgtttaaattc------aaatttaacctc---gatgatacaact-----------gtcccagGCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCTCAAAGAAATGGAAAGTTATCAGTTCAAGTTTTTCAT
upper sequence: Vv14s0171g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G07100.1 (Glycine max), 3'ss of exon 7
gtaatacttgagt-cctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcagGCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCTCAAAGAAATGGAAAACTAACAGTGCAAAAATTTCAT
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gtacgagttggacatttactttgttttgttaagcattttgttgtttaaattc------aaatttaacctt---gatgatgcaact-----------gtcccagGCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCTCAAAGAAATGGAAAGTTATCAGTTCAAGTTTTTCAT
upper sequence: Vv14s0171g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G14260.2 (Arabidopsis thaliana), 3'ss of exon 7
gtaatacttgagtcctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcagGCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCTCAAAGAAATGGAAAACTAACAGTGCAAAAATTTCAT
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gtaattacaaaactttgt--tgcgttactgtaaacactagtgtag---tgttcatgtaattcctcactgtttgcatgtttta-tgcgtcatacacattcaagGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCTCAAAGGAACGGAAAATTATCCCAACAAGTATTTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27585508|gb|CB008203.1|CB008203EST: ATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAG GCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCT
genomic: ATTATGGTTTTGTTGATGAAGACAATTCCTATGATCGTATAGTGGTTGAGgtaatacttg ... tctgtttcagGCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttttgggtgaactcttcctttttattgatataactttataatctctgtttcagGCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCTCAAAGAAATGGAAAACTAACAGTGCAAAAATTTCAT
atataac putative branch site (score: 3)
tctctgtttc putative PPT
ttcctttttattgata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtaatacttgagtcctacccttttttatacaaaattttactgtttgctcttttgggtgaactcttcctttttattgatataactttataatctctgtttcagGCAGCTCTTAACACTGAGGATCCTCAATATCAGGACAAGAGAATGGTTGCTCAAAGAAATGGAAAACTAACAGTGCAAAAATTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA