1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctacttcctacaattttgagtgccatgtaattactgttttatatcttccatctgttggcggtcctttattaatactcatattggagatctatgttacagATAAGAGGTATGCACACACTGATTCGGGACCATGAAATATCAAAGCATGATTTTGTTTTCTATTCAGATCGTCTTATTCGACTG
species | Vitis vinifera |
transcript | Vv14s0171g00090.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCTCTGCAAAATTTATCCCAATGTAAATGTTATTCAATCTACATTCCAG ATAAGAGGCATGCACACACTGATTCGGGACCATGAAATATCAAAGCATGATEST: gi|110701989|gb|EE080193.1|EE080193
genomic: ATCTCTGCAAAATTTATCCCAATGTAAATGTTATTCAATCTACATTCCAGgtatgcctat ... tatgttacagATAAGAGGTATGCACACACTGATTCGGGACCATGAAATATCAAAGCATGAT
EST: ATCTCTGCAAAATTTATCCCAATGTAAATGTTATTCAATCTACATTCCAG ATAAGAGGCATGCACACACTGATTCGGGACCATGAAATATCAAAGCATGATEST: gi|37190189|gb|CF609538.1|CF609538
genomic: ATCTCTGCAAAATTTATCCCAATGTAAATGTTATTCAATCTACATTCCAGgtatgcctat ... tatgttacagATAAGAGGTATGCACACACTGATTCGGGACCATGAAATATCAAAGCATGAT
EST: ATCTCTGCAAAATTTATCCCAATGTAAATGTTATTCAATCTACATTCCAG ATAAGAGGTATGCACACACTGATTCGGGACCATGAAATATCAAAGCATGAT
genomic: ATCTCTGCAAAATTTATCCCAATGTAAATGTTATTCAATCTACATTCCAGgtatgcctat ... tatgttacagATAAGAGGTATGCACACACTGATTCGGGACCATGAAATATCAAAGCATGAT
cttccatctgttggcggtcctttattaatactcatattggagatctatgttacagATAAGAGGTATGCACACACTGATTCGGGACCATGAAATATCAAAGCATGATTTTGTTTTCTATTCAGATCGTCTTATTCGACTG
tattaat putative branch site (score: 2)
tttattaatactcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctacttcctacaattttgagtgccatgtaattactgttttatatcttccatctgttggcggtcctttattaatactcatattggagatctatgttacagATAAGAGGTATGCACACACTGATTCGGGACCATGAAATATCAAAGCATGATTTTGTTTTCTATTCAGATCGTCTTATTCGACTG
- - - -cctacaa
- - - - - - - - - - - -ccatgta