Sequence
atgc intronic sequence ATGC exonic sequence...aatctcattatgcttctgcatctgtgatgttctgacattgataatgaagatcacaaattcttgctatattattctgattattttcaaaataatttattagCTCGGCTGATATATGGAGTGTTGGATGTACCGTTATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAAAAGTACCAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G42340.1 (Glycine max), 3'ss of exon 7
-aatctcattatgcttctgcatctgtg-atgttctgacattgataatgaagatcacaaattcttgctatattattctgattattttcaa-aataatttattagCTCGGCTGATATATGGAGTGTTGGATGTACCGTTATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAAAAGTACCAAGAG---
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tattttgtttatttttttgtgcttgtgtataatatctt-ttggtaatgatgtttc--atttgaagccaaataaagatgttttcatatattgacgccttttcagCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAG
upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 7
-aatctcattatgcttctgcatctgtg-atgttctg-acattgataatgaagatcacaaattcttgctatattattctgattattttcaaaataatttattagCTCGGCTGATATATGGAGTGTTGGATGTACCGTTATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAAAAGTACCAAGAG---
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atcttttgttttgtttttttgtgcatgtgtataatatattttggtaatgatgttcat---ttgaagccaaataaagacgtttcatatatttatgctttttcagCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAG
upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G54960.1 (Arabidopsis thaliana), 3'ss of exon 7
aatctcattatgcttctgcatctgtgatgttctgacattgataatgaagatcacaaattcttgctatattattctgattattttcaaaataatttat-tagCTCGGCTGATATATGGAGTGTTGGATGTACCGTTATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAAAAGTACCAAGAG
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-------gtaagcat-tacttcaaacatgtt-tgtaattgcta-----ggttacatgctttgtc---gccaatctaatattaccttggttattctatgcagTTCTGCTGATATTTGGAGTGTAGGATGCACAGTGATTGAAATGGTGACTGGAAAAGCTCCTTGGAGCCAGCAATATAAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaagatcacaaattcttgctatattattctgattattttcaaaataatttattagCTCGGCTGATATATGGAGTGTTGGATGTACCGTTATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAAAAGTACCAAGAG
ttctgat putative branch site (score: 3)
ttgctatattattctg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatctcattatgcttctgcatctgtgatgttctgacattgataatgaagatcacaaattcttgctatattattctgattattttcaaaataatttattagCTCGGCTGATATATGGAGTGTTGGATGTACCGTTATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAAAAGTACCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - -ctgcatc
- - - - - - - - - - - - - - - -ctgacat
- - - - - - - - - - - - - - - - - - - - - aatgaaga
- - - - - - - - - - - - - - - - - - - - - - - - - tcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaaaat