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gtgagtatccctggtccttgtttcctttagatccaaataattagtactttttatgcttattaaatgaatatatttatctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAG
species | Vitis vinifera |
transcript | Vv14s0083g00540.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGTTTTCCAAGTTGGTCTGGCCCTACTGAAAATATTGCCATGATGACTTA ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAGEST: gi|351012823|gb|FQ430386.1|FQ430386
genomic: CGTTTTCCAAGTTGGTCTGGCCCTACTGAAA-TATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
EST: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAGEST: gi|349827061|gb|FQ421334.1|FQ421334
genomic: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
EST: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAGEST: gi|349829128|gb|FQ419660.1|FQ419660
genomic: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
EST: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAGEST: gi|351038918|gb|FQ457593.1|FQ457593
genomic: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
EST: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAGEST: gi|110417184|gb|EC983219.1|EC983219
genomic: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
EST: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTA ACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
genomic: TCGTTTTCCAAGTTGGTCTGGCCCTACTGAAATATTGCCATGATGACTTAgtgagtatcc ... atctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAG
atccaaataattagtactttttatgcttattaaatgaatatatttatctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAG
tttatct CT-rich tract
aataattagtactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatccctggtccttgtttcctttagatccaaataattagtactttttatgcttattaaatgaatatatttatctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG