Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttatgatcaaaatacttgtgatttcccatcatcatttcaatttttacactgagcacgagttaactacaatggttcctttgttttctccccttctcagGTGGTGCGAGCCTTGGACTCCATGGATGAATTGTCAGACCTTACCAATGGAATGAAACCGGGACAAAGCGAAGTCTTTGATTCGGCACAACATTCTGCAC

Basic information

species Vitis vinifera
transcript Vv14s0083g00330.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372905|gb|EC937101.1|EC937101
EST:     CTGCAGCATGTGTGCGTCACTCAGCTTCTAAGAGGCCAAGGATGAGTCTG                         GTGGTGCGAGCCTTGGACTCCATGGATGAATTGTCAGACCTTACCAATGGA
genomic: CTGCAGCATGTGTGCGTCACTCAGCTTCTAAGAGGCCAAGGATGAGTCTGgtaatttatg ... cccttctcagGTGGTGCGAGCCTTGGACTCCATGGATGAATTGTCAGACCTTACCAATGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacactgagcacgagttaactacaatggttcctttgttttctccccttctcagGTGGTGCGAGCCTTGGACTCCATGGATGAATTGTCAGACCTTACCAATGGAATGAAACCGGGACAAAGCGAAGTCTTTGATTCGGCACAACATTCTGCAC
               agttaac  putative branch site (score: 3)
 tggttcctttgttttc  putative PPT
 tttgtttt  TA-rich tract