1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgaattccatgaccaaatagcattgccttttagtttaatgtttgatttagtggaaatctgtacttaatgggtgtatgtttgattcttaatgtgatacagATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAGTTGGAAAAATTGATGCGAGACCAGGAAACATTTAGGAGCACTCTTTTGC
species | Vitis vinifera |
transcript | Vv14s0068g01280.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAA ATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|349827680|gb|FQ422548.1|FQ422548
genomic: GACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAAgtgagtttgt ... tgtgatacagATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAA ATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|351024893|gb|FQ433310.1|FQ433310
genomic: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAAgtgagtttgt ... tgtgatacagATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAA ATTCGTGATTTTGGATATAGEST: gi|110699022|gb|EE077184.1|EE077184
genomic: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAAgtgagtttgt ... tgtgatacagATTCGTGATTTTGAATATAG
EST: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAA ATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|110688297|gb|EE066689.1|EE066689
genomic: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAAgtgagtttgt ... tgtgatacagATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAA ATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|351022393|gb|FQ445168.1|FQ445168
genomic: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAAgtgagtttgt ... tgtgatacagATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAA ATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|351013608|gb|FQ429749.1|FQ429749
genomic: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAAgtgagtttgt ... tgtgatacagATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAA ATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|71887796|gb|DT036851.1|DT036851
genomic: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAAgtgagtttgt ... tgtgatacagATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAA ATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAGEST: gi|110700866|gb|EE077894.1|EE077894
genomic: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAAgtgagtttgt ... tgtgatacagATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAG
EST: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAAGATTTCAA ATTCGTGATTTTGAATATAGTTCAAAAGCAC
genomic: ACCGTGTTGCTGACAATTTTAGAACAAATGCACGTGAAAGAGGATTTCAAgtgagtttgt ... tgtgatacagATTCGTGATTTTGAATATAGTTCAGAAGCAC
atttagtggaaatctgtacttaatgggtgtatgtttgattcttaatgtgatacagATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAGTTGGAAAAATTGATGCGAGACCAGGAAACATTTAGGAGCACTCTTTTGC
tcttaat putative branch site (score: 3)
attcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaattccatgaccaaatagcattgccttttagtttaatgtttgatttagtggaaatctgtacttaatgggtgtatgtttgattcttaatgtgatacagATTCGTGATTTTGAATATAGTTCAGAAGCACAGGAAAGTAGGAAGGAAGAGTTGGAAAAATTGATGCGAGACCAGGAAACATTTAGGAGCACTCTTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - -ccatgac
- - - - - - - -aaatagc
- - - - - - - - - - - - tgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - ggaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatg