Sequence
atgc intronic sequence ATGC exonic sequence...tggacaaccttgcaattgtcatttgctgtaattgagtttcctgtcttaaatttcagatgttgattactagtttatgactatttccttttgctcctcctagTGTTCGCAATCTGGCGGGCAAGATCACCATCCAAGAACCTACATTTGATAGGATAATTGTTGTTTACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 7
tggacaaccttgcaattgtcatttgctgtaattgagtttcctgtcttaaatttcagatgtt-gatta-ctagtttatgactatttccttttgctc-ctcctagTGTTCGCAATCTGGCGGGCAAGATCACCATCCAAGAACCTACATTTGATAGGATAATTGTTGTTTACAG
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--ttttatctcatcaaaactgctgagctcatgcatgtaaactgtat-aaatcttgaatgtttgattatcttgtcactcataaaaattgtttgctaatttccagTTTCGGTAGTTTGCTGAACAAGAACACAATCCAAGAACCTACATTTGATAGGATAATTGTTGTGTACAG
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G26360.1 (Glycine max), 3'ss of exon 7
tggacaaccttgcaattgtcatttgctgtaattgagtttcctgtcttaaatttcagatgtt--gattactagtttatgactatttccttttgctcctcctagTGTTCGCAATCTGGCGGGCAAGATCACCATCCAAGAACCTACATTTGATAGGATAATTGTTGTTTACAG
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-gttttatctcaccaaaactgctgatctcatgcatgtaaactgtat-aaatattgaatgtttgaatatcttgtcgctcatgaaattgtttgttaatttccagTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAG
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G27800.1 (Glycine max), 3'ss of exon 7
tggacaaccttgcaattgtcatttgctgtaattgagtttcctgtcttaaatttcagatgt-tgattactagtttatg---actatttccttttgctcctcctagTGTTCGCAATCTGGCGGGCAAGATCACCATCCAAGAACCTACATTTGATAGGATAATTGTTGTTTACAG
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---gtttctttctcaccaaaaatgaggctcattatctacattg-cataaattttgaatgtgtgatgatctggtcactcatgtgatgattttctgcaatttccagTTTCCATAATTTGCTGGGCAAGACCTTAATCCAAGAACCAACATTTGATAGGATAATTGTTGTCTACAG
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G05180.1 (Glycine max), 3'ss of exon 7
---tggacaaccttgcaattgtcatttgctgtaattgagtttcctgtcttaaatttcagatg--ttgattactagtttatgactatttccttttgctcctcctagTGTTCGCAATCTGGCGGGCAAGATCACCATCCAAGAACCTACATTTGATAGGATAATTGTTGTTTACAG
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ttctcaccaaaaatgctatgctcatgatctatgtt---gcataaatttttgattgtgtgatgatctggtcactcactcatg--tgatgatttatgcaatttccagTTTCCGTAATTTGCTGGGCAAGACCTTAATCCAAGAACCAACATTTGATAGGATAATTGTTGTCTACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaaatttcagatgttgattactagtttatgactatttccttttgctcctcctagTGTTCGCAATCTGGCGGGCAAGATCACCATCCAAGAACCTACATTTGATAGGATAATTGTTGTTTACAG
tgttgat putative branch site (score: 4)
ctatttccttttgctc putative PPT
tagtttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggacaaccttgcaattgtcatttgctgtaattgagtttcctgtcttaaatttcagatgttgattactagtttatgactatttccttttgctcctcctagTGTTCGCAATCTGGCGGGCAAGATCACCATCCAAGAACCTACATTTGATAGGATAATTGTTGTTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - -ccttgca
- - - - - - - - - -catttgc
- - - - - - - - - - - - - - - - - - - tcctgtc