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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcattgattatagtcacactcttgtagcttccaattttccaggaaaatctgatgctgtttgtgatttgggacccagAAAAACAGGGAGGATCACATTGATATTGTCGCATTTTACAATGAAATCTTCCTCTGGGCTGTAAAGCCTTTACTGGTTGAGGTTAGACCTGCCAAAGTGT

Basic information

species Vitis vinifera
transcript Vv14s0068g00840.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110359081|gb|EC919969.1|EC919969
EST:     AAGTGGCCAGCCATGTGTTTGTTAACAGGTCACCAGCACATGGGAATGGG                         AAAAACAGGGAGGATCACATTGATATTGTCGCATTTTACAATGAAATCTTC
genomic: AAGTGGTCAGCCATGTGTTTGTTAACAGGTCACCAGCACATGGGAATGGGgtatgttcat ... tgggacccagAAAAACAGGGAGGATCACATTGATATTGTCGCATTTTACAATGAAATCTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtagcttccaattttccaggaaaatctgatgctgtttgtgatttgggacccagAAAAACAGGGAGGATCACATTGATATTGTCGCATTTTACAATGAAATCTTCCTCTGGGCTGTAAAGCCTTTACTGGTTGAGGTTAGACCTGCCAAAGTGT
                         atctgat  putative branch site (score: 4)
           aatttt  TA-rich tract