Sequence
atgc intronic sequence ATGC exonic sequence...ctttttggctaagcaccttatttacctatcaataaatataatttcctgtaccttatcatatgtaatgcatgaattgcttctgatccatcttttataacagGTTAAAGGTGAGCCAAATATATCATATATTTGTTCTCGTTATTATCGAGCACCAGAACTCATATTTGGTGCAACGGAGTACACAACTGCAATTGACATGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 3'ss of exon 6
ctttttggctaagcaccttatttacctatcaataaatataatttcctgtaccttatcatatgtaatgcatga-------attgcttctgatccatcttttataa--cagGTTAAAGGTGAGCCAAATATATCATATATTTGTTCTCGTTATTATCGAGCACCAGAACTCATATTTGGTGCAACGGAGTACACAACTGCAATTGACATGT
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------gagtctgcag--tggttgctcat-aatatggaaattgtctcgtgcggtattcagttgaatgcgtgggtgcagcattgatcatagtgagatttgagttgtgcagGTGAAAGGGGAGCCTAATATTTCGTACATTTGTTCACGATATTACCGTGCTCCCGAGCTGATATTTGGAGCTACAGAATACACAACTGCGATTGACATAT
upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 7
ctttttggctaagcaccttatttacctatcaataaatataatttcctgtaccttatcatatgtaatgcatgaattgcttctgatccatcttttataacagGTTAAAGGTGAGCCAAATATATCATATATTTGTTCTCGTTATTATCGAGCACCAGAACTCATATTTGGTGCAACGGAGTACACAACTGCAATTGACATGT
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---------------------gtgggtgcttacaaataggatc-cttggaattcagcagctgatttgcgtttcctgctttt--cttggcaaaacaaacagGTGAAAGGAGAGCCCAACATATCGTATATCTGTTCCCGTTATTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCT
upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 7
ctttttggctaagcaccttatttacctatcaataaatataatttcctgtaccttatcatatgtaatgcatgaattgcttctgatccatcttttataacagGTTAAAGGTGAGCCAAATATATCATATATTTGTTCTCGTTATTATCGAGCACCAGAACTCATATTTGGTGCAACGGAGTACACAACTGCAATTGACATGT
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---------------------gtgggtgcttacaaataggatc-cttggaattcagcagctgatttgcgt---ttcctgcttttcctggcaaaacaacagGTGAAGGGAGAGCCCAACATATCGTATATCTGTTCCCGTTACTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtaccttatcatatgtaatgcatgaattgcttctgatccatcttttataacagGTTAAAGGTGAGCCAAATATATCATATATTTGTTCTCGTTATTATCGAGCACCAGAACTCATATTTGGTGCAACGGAGTACACAACTGCAATTGACATGT
ttctgat putative branch site (score: 3)
tccatctttt CT-rich tract
ttatcatatgtaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctttttggctaagcaccttatttacctatcaataaatataatttcctgtaccttatcatatgtaatgcatgaattgcttctgatccatcttttataacagGTTAAAGGTGAGCCAAATATATCATATATTTGTTCTCGTTATTATCGAGCACCAGAACTCATATTTGGTGCAACGGAGTACACAACTGCAATTGACATGT
- - - - - - gcacctt
- - - - - - - - - - - - - - - aataaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atccatc