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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcagctagaatgcctatgtattcagttacaatattttattcccttttaggatcaagaaattctcctatctaatgtttattctatttatggtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG

Basic information

species Vitis vinifera
transcript Vv14s0060g02260.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 7
gcagctagaatgcctatgtattcagttacaatattttattcccttttaggatcaagaaattctcctatctaat-gtttattctattt-atggtaacatgt-----agGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG
     ||  ||    || |  |   ||  |||       ||  | ||  ||| |  ||  | | || | || |  |||  ||| ||| ||||||   | |     |||| ||||| ||||| || || ||||| ||||| || |||||  | |||||||||||||| ||||| || || ||||||||||| |||||  |||||||||
-tcaatatcatcttgatatcattgcttcgaat------ctctatgttttgattagcaatgttttctttttagtcatttcatctgtttgatggtatattattggtcagGTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGATCTGGTCGTTTGGACCGAAAGATTGAGTTTCCTCATCCATCTGAAGAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 7
-----------------------------------------------------------------------------------------gcagctagaatgcctatgtattcagttaca----atattttattcccttttaggatca-agaaattctcctatctaatgtttattctatttatg-gtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG
                                                                                           | ||  | ||   |||   | ||  | |    |  |  ||||   |   |   ||  |   | | ||   | || |     ||  |||  || ||  | |  |||||||||| |||||||| || ||||||||||| || ||||| || ||| ||||||||||  |||| || || |||||||| || |||||  | || ||||
gtcagcattcaacctcaaacctattagttattacagtcttgatgctttgtctcaggttttgttcagttgcaggttgagaaggtataaagttacctctattgatcatgatatgagagatagatgaactgatattttttcccaatgtcttatttaatatctggtgtactaaacgtttgattgttgtgtggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGATCTGGTCGTCTGGACCGGAAGATTGAGTTCCCTCATCCATCAGAGGAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G38030.1 (Glycine max), 3'ss of exon 7
gcagctaga---atgcctatgtattcagttacaatattttattcccttttaggatcaagaaattctcctatctaatgtttattctatttatggtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG
|  ||||||   |    |  | |   | |||      ||| |   |  ||||| |  ||   |  |    |   || || ||| ||||  || |||  || |||||||||||||||||||||| || |||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| || | ||||||||
gtggctagatttagaagttggcaccaaattaactggatttttgttcagttaggctataggt-tgttgaagtgccattttcatt-tattcttg-taaattgcagGTGATAGCAGCAACAAACCGTGCAGATATTCTTGACCCTGCCCTTATGCGTTCTGGTCGATTAGATCGTAAAATTGAGTTTCCACACCCAAGTGAAGAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G39500.1 (Glycine max), 3'ss of exon 7
---gcagctagaatgcct-atgtattcagttacaatattttattcccttttaggatcaagaaattctcctatctaatgtttattctatttatggtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG
     | | |  || | | ||||   ||   | ||| | |||     || |    | |  || |       |  ||||    ||  | ||   ||||  |  ||||||| |||||||||||||| ||||| ||||| || ||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||
ctcaaaacaaacatacatgatgttgaca-caaaaatgtgttagatttttattcagttagaaattaggtgattgaaatgccattttcactt---gtaaattacagGTGATTGCAGCAACAAACCGTGCTGACATTCTTGATCCTGCCCTTATGCGTTCTGGTCGATTGGATCGAAAAATTGAGTTCCCACACCCAACTGAAGAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G29250.1 (Glycine max), 3'ss of exon 7
gcagctagaatgcctatgtattcagttacaatattttattcccttttaggat-caagaaattctcctatc-taatgtttattctatttatggtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG
  || |        |  | |   | |||      ||| |   |  ||||| |  | |  |||    |  | |  | || ||| | ||| | ||||  || |||||||||||||||| ||||| || |||||||| || ||||| || ||||| |||||||| |||||||||||||||||||||||||| || | ||||||||
-tagatttgtaagttg-gcaccaaattaactggatttttgttcagttaggctataggttattgaagtgccatttttttcattttttttcttgtaaattgcagGTGATAGCAGCAACTAACCGTGCAGATATTCTTGATCCTGCCCTGATGCGTTCTGGTCGTTTGGATCGTAAAATTGAGTTTCCACACCCAAGTGAAGAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 3'ss of exon 7
gcagctagaatgcctatgtatt-cagttacaatattttattccctt--ttaggatcaagaaattctcctatctaatgtttattctatttatggtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG
   | |   |  |||   |||| |   | |||   | ||||   ||  | |    || ||||  ||| ||          ||| ||         | |  ||||| || ||||| ||||| || |||||||| || || ||||| |||||||| |||||||| |||||||||||||| |||||||| || |||||||||||||
---gttgttacccct-catattacccctgcaaatgtctatttatttagtgaaaggcatgaaaaactcata----------attttac--------aaacttagGTTATTGCAGCGACAAATCGTGCTGATATACTAGATCCTGCCCTTATGCGTTCTGGTCGTTTGGATCGTAAAATCGAGTTTCCGCACCCCACTGAAGAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 7
gcagctagaatgcctatgtattcagttacaatattttattcccttttaggatcaagaaattctcctatctaatgtttattctatttatggtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG
   |  ||  |   |||  ||||         ||  || |    || |  |||       ||    |   | |    |   ||  | |       |  ||||||| ||||| || ||||| || |||||||||||||| ||||| ||||| ||||||||||| ||  | || |||||||| ||||| || || |||||||
---gtgagtgtctttatccattctaaggactaatcatactggtcttaaaaatcgtt---ctcaaagaaacagtaacaaccatacctttctattttttcagGTGATTGCAGCTACTAACCGTGCAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGACAGAAAGATTGAGTTCCCACACCCAACCGAAGAAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S218_133V6.1 (Physcomitrella patens), 3'ss of exon 7
-----gcagctagaatgcctatgtattcagttacaatattttattcccttttaggatcaagaaattctcctatctaatgtttattctatttatggtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG
     ||     |   | || | | | ||||||   || |     |  |  |   ||||| |   | |  ||   ||  | | |   || |  |   |     |||| |||||||| |||||| |||| |||||| ||||||||||  | ||||| ||||| || |||||| | || ||||||||||| ||||| || || || |
ctctggccatgtgttcgactgtatgtccagtta---tactacggccattcatgatatcaacagtgtttgttaatgaac-tctctgtcatatg-gtccatgaacagGTAATAGCAGCTACAAACAGAGCAGATATTTTGGACCCTGCTTTGATGCGTTCTGGACGTTTGGATAGGAAGATTGAGTTTCCTCATCCAACGGAGGAGG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ37626 (Selaginella moellendorffii), 3'ss of exon 7
gcagctagaatgcctatgtattcagttacaatattttattcccttttaggatcaagaaattctcctatctaatgtttattct-atttatggtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG
                                                      |  |  ||| | | || | ||  ||||| |||  |  | ||  | ||||||| |||||||||||| |||| |||||||| ||||| || || ||||||||||| ||  ||||  | || || || ||||| |||||||| || || |
---------------------------------------------------gtgaatatctctgcaacctta-gtgaattcttattcgttttcacgcgcagGTGATCGCAGCAACAAACAGAGCAGATATTCTAGACCCGGCTCTGATGCGATCTGGCCGTCTGGACAGGAAGATCGAATTTCCTCATCCCACCGAGGATG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ15061 (Selaginella moellendorffii), 3'ss of exon 7
gcagctagaatgcctatgtattcagttacaatattttattcccttttaggatcaagaaattctcctatctaatgtttattct-atttatggtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG
                                                      |  |  ||| | | || | ||  ||||| |||  |  | ||  | ||||||| || ||||||||| |||| |||||||| ||||| || || ||||||||||| ||  ||||  | || || || ||||| |||||||| || || |
---------------------------------------------------gtgaatatctctgcaacctta-gtgaattcttattcgttttcacgcgcagGTGATCGCGGCAACAAACAGAGCAGATATTCTAGACCCGGCTCTGATGCGATCTGGCCGTCTGGACAGGAAGATCGAATTTCCTCATCCCACCGAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32245929|gb|CD711748.1|CD711748
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|46918304|gb|CN547633.1|CN547633
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTTTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|110384620|gb|EC949072.1|EC949072
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|110387216|gb|EC951866.1|EC951866
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|110369399|gb|EC933558.1|EC933558
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|71880359|gb|DT029414.1|DT029414
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|34550777|gb|CF518995.1|CF518995
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGCCCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|110718444|gb|EE095285.1|EE095285
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|27585610|gb|CB008305.1|CB008305
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|71878498|gb|DT027553.1|DT027553
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|71878266|gb|DT027321.1|DT027321
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|33408222|gb|CF213849.1|CF213849
EST:     TTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|45771197|gb|CN007049.1|CN007049
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|30128623|gb|CB913962.1|CB913962
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|30252313|gb|CB969864.1|CB969864
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|30252322|gb|CB969873.1|CB969873
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|83275987|gb|DV939995.1|DV939995
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|110405468|gb|EC971009.1|EC971009
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|30255105|gb|CB971552.1|CB971552
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|30252235|gb|CB969786.1|CB969786
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGGCACTTATGCG
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTG-CACTTATGCG
EST: gi|30300725|gb|CB977519.1|CB977519
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTTTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|110722804|gb|EE099394.1|EE099394
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|110375176|gb|EC940137.1|EC940137
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|30252226|gb|CB969777.1|CB969777
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAAACCGAGCTGATATTCTGGACCCTGCACTTTATGN
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAA-CCGAGCTGATATTCTGGACCCTGCACTT-ATGC
EST: gi|34543899|gb|CF512131.1|CF512131
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
EST: gi|71877789|gb|DT026844.1|DT026844
EST:     TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG                         GTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA
genomic: TGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgt ... taacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggatcaagaaattctcctatctaatgtttattctatttatggtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG
                                          tggtaac  putative branch site (score: 2)
                    tatctaatgtttattc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcagctagaatgcctatgtattcagttacaatattttattcccttttaggatcaagaaattctcctatctaatgtttattctatttatggtaacatgtagGTGATAGCAGCAACAAACCGAGCTGATATTCTGGACCCTGCACTTATGCGATCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - -gaatgcc
- - - - - - - - - - - - - - - - - - - - ccctttt
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