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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtaacacttgcttaatttccttaatggcgcgttaattccacttactctgttcttagtcctgtctttggtgttggtgctttttctcagCGATGCAGTACTCATCACCCATGAGCTCATAAAGCTGAGTGTTGACTTGGGATAACTGGTAGGCCATCTGATCCATACACTGAATCTCAATATGAATAAG

Basic information

species Vitis vinifera
transcript Vv14s0060g02190.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579026|gb|CB001721.1|CB001721
EST:     AAATGCAGTGCCTGATTATCAGATCTTCATTTGCTGACACCCTTCTGGAG                         CGATGCAGTACTCATCACCCATGAGCTCATAAAGCTGAGTGTTGACTTGGG
genomic: AAATGCAGTGCCTGATTATCAGATCTTCATTTGCTGACACCCTTCTGGAGgtcggtaaca ... tttttctcagCGATGCAGTACTCATCACCCATGAGCTCATAAAGCTGAGTGTTGACTTGGG
EST: gi|30328734|gb|CD011996.1|CD011996
EST:     AAATGCAGTGCCTGATTATCAGATCTTCATTTGCTGACACCCTTCTGGAG                         CGATGCAGTACTCATCACCCATGAGCTCATAAAGCTGAGTGTTGACTTGGG
genomic: AAATGCAGTGCCTGATTATCAGATCTTCATTTGCTGACACCCTTCTGGAGgtcggtaaca ... tttttctcagCGATGCAGTACTCATCACCCATGAGCTCATAAAGCTGAGTGTTGACTTGGG
EST: gi|30328427|gb|CD011689.1|CD011689
EST:     AAATGCAGTGCCTGATTATCAGATCTTCATTTGCTGACACCCTTCTGGAG                         CGATGCAGTACTCATCACCCATGAGCTCATAAAGCTGAGTGTTGACTTGGG
genomic: AAATGCAGTGCCTGATTATCAGATCTTCATTTGCTGACACCCTTCTGGAGgtcggtaaca ... tttttctcagCGATGCAGTACTCATCACCCATGAGCTCATAAAGCTGAGTGTTGACTTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattccacttactctgttcttagtcctgtctttggtgttggtgctttttctcagCGATGCAGTACTCATCACCCATGAGCTCATAAAGCTGAGTGTTGACTTGGGATAACTGGTAGGCCATCTGATCCATACACTGAATCTCAATATGAATAAG
      cacttac  putative branch site (score: 2)
                                          tgctttttctc  putative PPT
                                             tttttct  TA-rich tract