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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatgatgcactaatgtgttcctttccttataatcgattaagttttaggtgaaacgttgagaaagactgattgtatggcttgaccttttgttagTCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG

Basic information

species Vitis vinifera
transcript Vv14s0060g02160.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02160.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os03g22430.1 (Oryza sativa), 3'ss of exon 7
gtgagtatgatgcactaatgtgt-tcctttccttataatcgattaagttttaggtgaaacgttgagaaagactgattgtatggcttgaccttttgttagTCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG
                 |||||| |  |||   |||| |   | || |  | ||||    ||||  |     | |    ||   || | ||||| | || |   |||||   ||   |  ||||||||| |||||| ||||||||||||    || || || |||||||||||||||||||||
---------------gtatgtgtatatttttaatatatttcttgaactacttggtgccttgttgtca-----ttagaacataaatttatcttttatcagCCACCAGAGAAAATAGACAAGGTGATGAGAGGACCATTTTATATGGATTCCTTGAAGGCAAAGGAGTTTGGTGTCATTGACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34544987|gb|CF513219.1|CF513219
EST:     TAACAAACAGGGACACACTTGTGAAACTCCTGGCTAAGCACACTGGAAAT                         TCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCT
genomic: TAACAAACAGGGACACACTTGTGAAACTCCTGGCTAAGCACACTGGAAATgtgagtatga ... cttttgttagTCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCT
EST: gi|110375703|gb|EC940714.1|EC940714
EST:     TAACAAACAGGGACACACTTGTGAAACTCCTGGCTAAGCACACTGGAAAT                         TCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCT
genomic: TAACAAACAGGGACACACTTGTGAAACTCCTGGCTAAGCACACTGGAAATgtgagtatga ... cttttgttagTCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCT
EST: gi|110385484|gb|EC950016.1|EC950016
EST:     TAACAAACAGGGACACACTTGTGAAACTCCTGGCTAAGCACACTGGAAAT                         TCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCT
genomic: TAACAAACAGGGACACACTTGTGAAACTCCTGGCTAAGCACACTGGAAATgtgagtatga ... cttttgttagTCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCT
EST: gi|110383404|gb|EC947776.1|EC947776
EST:     TAACAAACAGGGACACACTTGTGAAACTCCTGGCTAAGCACACTGGAAAT                         TCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCT
genomic: TAACAAACAGGGACACACTTGTGAAACTCCTGGCTAAGCACACTGGAAATgtgagtatga ... cttttgttagTCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCT
EST: gi|34545979|gb|CF514211.1|CF514211
EST:     TAACAAACAGGGACACACTTGTGAAACTCCTGGCTAAGCACACTGGAAAT                         TCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCT
genomic: TAACAAACAGGGACACACTTGTGAAACTCCTGGCTAAGCACACTGGAAATgtgagtatga ... cttttgttagTCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttttaggtgaaacgttgagaaagactgattgtatggcttgaccttttgttagTCGGAAGAGACTGTATCTACTGTGATGAGAAGACCATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG
                                            ccttttgtt  CT-rich tract
                                              ttttgtta  TA-rich tract