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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctggttttctcaatctaagattagtctgttcaatcatagaaattggagtttacctatgtacagcagaaagtgatccactaatcttacactggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGACTATGGTAGCTGGAGGTGGTGCAAGTGTTATATATGCCGATACT

Basic information

species Vitis vinifera
transcript Vv14s0060g00550.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00550.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os11g47330.1 (Oryza sativa), 3'ss of exon 6
------------------------------------------------------------------------------------tttctggttttctca--atctaagattagtctgtt--caatcatagaaattggagtttacctatgtacagca------gaaagtgatccactaatcttacactggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGACTATGGTAGCTGGAGGTGGTGCAAGTGTTATATATGCCGATACT
                                                                                         ||||| | ||  |  | ||||  |  || |  || ||      | |    | |   | | |  |  |       || |||||    |   ||||  ||  | ||||||||||||||| |||||||||| ||||||||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| 
gtatccacatctcaaattacacgtttcacatttcaagcctcctccccaatcttatttaagtatgagttgcctgtataatatcatcagtaggtttgcacatgaattcagataggagtgctggcagtctggctcagtactatatgtttttttgaattattttctaaatgtgatatgatgtccttattct--ttcagACAAGTGCATCTCTGAAGTTCACCGTTTTGAACCCAAAGGGGCGCATCTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATATATGCTGATACA

upper sequence: Vv14s0060g00550.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os11g47120.1 (Oryza sativa), 3'ss of exon 6
------------------------------------------------------------------------------------tttctggttttctca--atctaagattagtctgtt--caatca----tagaaattggagtttacctatgta--cagcagaaagtgatccactaatcttacactggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGACTATGGTAGCTGGAGGTGGTGCAAGTGTTATATATGCCGATACT
                                                                                         ||||| | ||  |  | ||||  |  || |  || ||      || | |    ||||   |   |     ||  || |||||  | | | ||||  ||  | ||||||||||||||| |||||||||| ||||||||||| || || ||||||||||| ||||| ||||||||||                          
gtatccacatctcaaattacacgtttcacatttcaagcctcctccccaatcttttttaagtatgagttgcctgtataatatcatcagtaggtttgcacatgaattcagataggagtgctggcagtctggctcagcactatatgtttttttgaattatttgctaaatgtgatataatgaccttattct--ttcagACAAGTGCATCTCTGAAGTTCACCGTTTTGAACCCAAAGGGGCGCATCTGGACAATGGTTGCTGGAGGTG--------------------------

upper sequence: Vv14s0060g00550.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G107082_T01 (Zea mays), 3'ss of exon 6
------------------------------------tttctg-gttttctca-atctaagattagtctgttcaatcatagaaattggagtttacctatgtacagcagaaa----gtgatccactaatcttacactggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGACTATGGTAGCTGGAGGTGGTGCAAGTGTTATATATGCCGATACT
                                    |||||| | | | |||  | ||| || |     ||| || | | | | | ||  |    | | | | |  ||       | || | | || |||    |  | ||||||||||| ||| |||||||||| ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||| ||||| 
gtattgatctcagggctatgtttttatcttttattttttctgaggtctatcatgtataaaataatcagtttccattagaaatactagatctggagtgtattctgttgacgtgtgttaattcgccaaccttgt--tatttcagACAAGTGCCTCTCTGAAGTTCACGGTTTTGAACCCGAAAGGTCGCATCTGGACCATGGTCGCTGGTGGTGGTGCTAGTGTCATTTATGCTGATACA

upper sequence: Vv14s0060g00550.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G034083_T01 (Zea mays), 3'ss of exon 6
------------------------------------------------------------tttctggttttctcaatctaagattagtctgttcaatcatagaaattggagtttacctatgtacagcagaaagtgatccactaat--cttacactggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGACTATGGTAGCTGGAGGTGGTGCAAGTGTTATATATGCCGATACT
                                                            | | |  |||||      | | |||  | | |  | | |     ||||    ||   ||||| |  |   |  | |      ||   |||    |  ||||||||||||| ||| |||| ||||| ||  ||||||| ||||||||||||||||| ||||| || || |||||||| ||||| ||||| || || |||
gtatgttcatgtaaaagtggacaacttacattcgattccaacctttctccttgaagtaattatttcattttccagtgtttacatttctatttggattaacttttattgacagttctgtatgttccactagatttaagtagtgaaccacttctcttcttgcagACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGACAATGGTTGCAGGTGGTGGTGCTAGTGTCATATACGCAGACACT

upper sequence: Vv14s0060g00550.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G09430.1 (Arabidopsis thaliana), 3'ss of exon 7
--------tttctggttttctcaatctaagattagtctg-ttcaatca--------tagaaattggagtt--tacctatgtacagcagaaagtgatccactaatcttacactggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGACTATGGTAGCTGGAGGTGGTGCAAGTGTTATATATGCCGATACT
         | | | |||||| ||   |  | |  | ||  |||  ||        | |||| |   |||  |  | ||  |   | |   |||      |  |  |    |  ||||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||| || || |||||||| ||||| 
gtttaagcatccagcttttctaaaaacaccacttttgtgactcagacaggaaagacttgaaagtaatgttactgaccattcatgtctgtgtgtgtgtgtgtgtttgttacttattgcagACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCGCATTTGGACGATGGTAGCTGGAGGTGGTGCTAGCGTCATATATGCTGATACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402711|gb|CF208338.1|CF208338
EST:     GAAGAGTATTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|33409351|gb|CF214978.1|CF214978
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTT
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTT
EST: gi|71870972|gb|DT020027.1|DT020027
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|110424854|gb|EC991228.1|EC991228
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|29783688|gb|CB350023.2|CB350023
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|33410181|gb|CF215808.1|CF215808
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|30253173|gb|CB970724.1|CB970724
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|30301408|gb|CB978202.1|CB978202
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|30256368|gb|CB972211.1|CB972211
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|33404234|gb|CF209861.1|CF209861
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|29783867|gb|CB350325.2|CB350325
EST:     TCGTTGGATGAAAAG                         ACAAGTGCATTC-TTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTG
genomic: TCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCA-TCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTG
EST: gi|71890536|gb|DT039591.1|DT039591
EST:     CCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: CCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|71870674|gb|DT019729.1|DT019729
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|33401628|gb|CF207255.1|CF207255
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|156735476|gb|EV239597.1|EV239597
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGGTTTTGA-CCCCAAAAGACGCATCTG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTG-TTTTGAACCCCAAAGGACGCATCTG
EST: gi|45771366|gb|CN007218.1|CN007218
EST:     G-AGAGTA-TAAG-CCCACAGA-GGCTACA-TCACTCGTT-GA-GAAAAG                         AC-AGTGCATC-TTGAAGTTCACTG-TTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|77578610|gb|DV218094.1|DV218094
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|45771374|gb|CN007226.1|CN007226
EST:     AGAGTACT-AGCCCCACAGAGGGCTACATTCACT-GTNGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: AGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|349832974|gb|FQ416352.1|FQ416352
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|110700143|gb|EE077843.1|EE077843
EST:     AA-AGTACTAAGCCCCA-AGAGGGCTAC-TTCACTCGTTGGGA-GAAAAG                         ACA-GTGCTTCTTT
genomic: AAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGG-ATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTT
EST: gi|161709750|gb|FC058051.1|FC058051
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|110730321|gb|EE107269.1|EE107269
EST:     GAAGA-TACTAAGCCCCCCAGAGGGCTAC-TTC-CTCCTTGGATGAAAAG                         A-AAGTGCATCTTTGA
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGA
EST: gi|30301339|gb|CB978133.1|CB978133
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|30298308|gb|CB975102.1|CB975102
EST:     GAAGAGTACTAAGCCCCACAGGGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|45771291|gb|CN007143.1|CN007143
EST:     GGCTACA-TCACTCG-TGGATGAAAAG                         ACAAG-GCATC-TTGAAGTTCACTG-TTTGAACCCCAAAGGACGCATCTGG
genomic: GGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|77586266|gb|DV222232.1|DV222232
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|30298235|gb|CB975029.1|CB975029
EST:     GAAGAGTACTAAGCCCCACAGGGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|161711977|gb|FC060844.1|FC060844
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTCGGATGAGAAG                         ACAAGTGCATCTGTGAAGTTCACTGT
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGT
EST: gi|161712114|gb|FC061486.1|FC061486
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|156735475|gb|EV239596.1|EV239596
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|110723142|gb|EE100116.1|EE100116
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAAGT-CACTGTTTTGAACCCCAAAG-ACGCATCTG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAA-GTTCACTGTTTTGAACCCCAAAGGACGCATCTG
EST: gi|33404311|gb|CF209938.1|CF209938
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|30253098|gb|CB970649.1|CB970649
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|110363975|gb|EC927611.1|EC927611
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|33409430|gb|CF215057.1|CF215057
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|77579387|gb|DV218527.1|DV218527
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|110420694|gb|EC986971.1|EC986971
EST:     GAAGA-TACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|110698064|gb|EE075650.1|EE075650
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|110710370|gb|EE086656.1|EE086656
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|37183558|gb|CF602912.1|CF602912
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|161712274|gb|FC061897.1|FC061897
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|71871483|gb|DT020538.1|DT020538
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: gi|161713803|gb|FC063791.1|FC063791
EST:     GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG                         ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggagtttacctatgtacagcagaaagtgatccactaatcttacactggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGACTATGGTAGCTGGAGGTGGTGCAAGTGTTATATATGCCGATACT
                                    taatctta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttctggttttctcaatctaagattagtctgttcaatcatagaaattggagtttacctatgtacagcagaaagtgatccactaatcttacactggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGACTATGGTAGCTGGAGGTGGTGCAAGTGTTATATATGCCGATACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
tttctgg
- - - - - - - - - - - - - - - - - - - atagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactaa