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gtctgaaaaatctccagttgtgttgaatcttcctttttttttggtgaaaaaagtaaaattaatgtagggttactaccacatacatggatatgtttgtaacattaatgctgacattatgttttcagGAGGTTATAGAGAAATCAAATTTGTATCCACATTGGAAATTCTACTACACAAATGTGAGACGGCAAGTGGGAAACACGACGATGGCGACCTATGAAGCAA
species | Vitis vinifera |
transcript | Vv14s0036g01060.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACAGCAGTTCCCACACCTTAATAGCATCTGGCTCTCCACAGAAATGCAG GAGGTTATAGAGAAATCAAATTTGTATCCACATTGGAAATTCTACTACACAEST: gi|351054437|gb|FQ450520.1|FQ450520
genomic: GACAGCAGTTCCCACACCTTAATAGCATCTGGCTCTCCACAGAAATGCAGgtctgaaaaa ... atgttttcagGAGGTTATAGAGAAATCAAATTTGTATCCACATTGGAAATTCTACTACACA
EST: GACAGCAGTTCCCACACCTTAATAGCATCTGGCTCTCCACAGAAATGCAG GAGGTTATAGAGAAATCAAATTTGTATCCACATTGGAAATTCTACTACACAEST: gi|110703597|gb|EE080580.1|EE080580
genomic: GACAGCAGTTCCCACACCTTAATAGCATCTGGCTCTCCACAGAAATGCAGgtctgaaaaa ... atgttttcagGAGGTTATAGAGAAATCAAATTTGTATCCACATTGGAAATTCTACTACACA
EST: GACAGCAGTTCCCACACCTTAATAGCATCTGGCTCTCCACAGAAATGCAG GAGGTTATAGAGAAATCAAATTTGTATCCACATTGGAAATTCTACTACACAEST: gi|34543598|gb|CF511830.1|CF511830
genomic: GACAGCAGTTCCCACACCTTAATAGCATCTGGCTCTCCACAGAAATGCAGgtctgaaaaa ... atgttttcagGAGGTTATAGAGAAATCAAATTTGTATCCACATTGGAAATTCTACTACACA
EST: GACAGCAGTTCCCACACCTTAATAGCATCTGGCTCTCCACAGAGATGC-G ATANGTTATAGAGAAATCAAATTTGTATCCACATTGAAAATTCTACTACAC
genomic: GACAGCAGTTCCCACACCTTAATAGCATCTGGCTCTCCACAGAAATGCAGgtctgaaaaa ... atgttttcagG-AGGTTATAGAGAAATCAAATTTGTATCCACATTGGAAATTCTACTACAC
tactaccacatacatggatatgtttgtaacattaatgctgacattatgttttcagGAGGTTATAGAGAAATCAAATTTGTATCCACATTGGAAATTCTACTACACAAATGTGAGACGGCAAGTGGGAAACACGACGATGGCGACCTATGAAGCAA
tgctgac putative branch site (score: 2)
tgttttc putative PPT
tttgtaacattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgaaaaatctccagttgtgttgaatcttcctttttttttggtgaaaaaagtaaaattaatgtagggttactaccacatacatggatatgtttgtaacattaatgctgacattatgttttcagGAGGTTATAGAGAAATCAAATTTGTATCCACATTGGAAATTCTACTACACAAATGTGAGACGGCAAGTGGGAAACACGACGATGGCGACCTATGAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA