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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttattttctttgggtatttggtttcaaatgctatttttttggttggaagaaatgattgttgtcttctcttctcatacctctgcattatttggattgcactctgccaatttatggattttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT

Basic information

species Vitis vinifera
transcript Vv14s0036g00520.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30300481|gb|CB977275.1|CB977275
EST:     GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTG                         AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
genomic: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
EST: gi|110379523|gb|EC944723.1|EC944723
EST:     GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTG                         AAGGACTGAATCAAATTAAGGGCCTGAAAGTCAATGTTACTTCAGTGGAGA
genomic: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
EST: gi|110727225|gb|EE103744.1|EE103744
EST:     GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTG                         AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
genomic: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
EST: gi|110362584|gb|EC926127.1|EC926127
EST:     GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTG                         AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
genomic: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
EST: gi|30130413|gb|CB915752.1|CB915752
EST:     AAGCTAAGATTTTAGCTG                         AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
genomic: AAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
EST: gi|46918393|gb|CN547722.1|CN547722
EST:     GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTG                         AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
genomic: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catacctctgcattatttggattgcactctgccaatttatggattttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT
                                 aatttatggatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttttattttctttgggtatttggtttcaaatgctatttttttggttggaagaaatgattgttgtcttctcttctcatacctctgcattatttggattgcactctgccaatttatggattttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA