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gtaatttttattttctttgggtatttggtttcaaatgctatttttttggttggaagaaatgattgttgtcttctcttctcatacctctgcattatttggattgcactctgccaatttatggattttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT
species | Vitis vinifera |
transcript | Vv14s0036g00520.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTG AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGAEST: gi|110379523|gb|EC944723.1|EC944723
genomic: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
EST: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTG AAGGACTGAATCAAATTAAGGGCCTGAAAGTCAATGTTACTTCAGTGGAGAEST: gi|110727225|gb|EE103744.1|EE103744
genomic: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
EST: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTG AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGAEST: gi|110362584|gb|EC926127.1|EC926127
genomic: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
EST: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTG AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGAEST: gi|30130413|gb|CB915752.1|CB915752
genomic: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
EST: AAGCTAAGATTTTAGCTG AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGAEST: gi|46918393|gb|CN547722.1|CN547722
genomic: AAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
EST: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTG AAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
genomic: GAACATTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGATTTTAGCTGgtaattttta ... ttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGA
catacctctgcattatttggattgcactctgccaatttatggattttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT
aatttatggatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttttattttctttgggtatttggtttcaaatgctatttttttggttggaagaaatgattgttgtcttctcttctcatacctctgcattatttggattgcactctgccaatttatggattttggtttcagAAGGACTGAATCAAATTAAGGGCCTAAAAGTCAATGTTACTTCAGTGGAGACCAATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA