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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttcacactaccttagctctcatattcttctctgattttggtaaaaattaaattcttaacttgctcttacagGAACTCAGGTGTGGTCTGCATGGGGCAGAATCAGATATAATACAATCTTGCCGAAGG

Basic information

species Vitis vinifera
transcript Vv14s0030g01790.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01790.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G36650.1 (Glycine max), 3'ss of exon 7
gtacttcacactaccttagctctcatattcttctctgattttggtaaaaattaaattcttaac-ttgctc-----------ttacagGAACTCAGGTGTGGTCTGCATGGGGCAGAATCAGATATAATACAATCTTGCCGAAGG
||| |   |||   |||  |  ||||       | |||   ||| |  | ||   |   | || || ||            ||  ||||||| |||||  || | || || ||||||||||||||||||| | |||||||||||
gtattcttcacattctttcccttcatccctcattatgaaggtggaatcatttctgtatgtgacattacttctctacatttgttttagGAACTTAGGTGCAGTGTTCAGGGAGCAGAATCAGATATAATACTAACTTGCCGAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcatattcttctctgattttggtaaaaattaaattcttaacttgctcttacagGAACTCAGGTGTGGTCTGCATGGGGCAGAATCAGATATAATACAATCTTGCCGAAGG
                                    tcttaac  putative branch site (score: 2)
                                          cttgctctt  CT-rich tract
                 attttggtaaaaatta  TA-rich tract