Sequence
atgc intronic sequence ATGC exonic sequence...tttatgataaaacctcagatcatgtaggaatacatataataatacgagaataatcatactaaagacaaaatacacttacagaatttctgacaaaatccagGCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 7
tttatgataaaacctcagatcatgtaggaatacatataataatacgagaataatcatactaaagacaaaatacacttacagaatttctgacaaaatccagGCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAA
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------------------gttagttaagcccaaacaaaccctcattagt-taacggttttatgctcagtgttaacttggatg-ttggtgactgattccagGCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAG
upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G027851_T03 (Zea mays), 3'ss of exon 5
tttatgataaaacctcagatcatgtaggaatacatataataat--acgagaataatcatactaaagaca--aaatac--acttacagaatttctgaca-aaatccagGCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAA
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--------------gtgagtcaaactaggaaacacttactagtcaacgatgttatacacttcgagaacatcaagtattaacttggctgcttgctgtcctgatttcagGCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG
upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 7
-tttatgataaaacctcagatcatgtaggaa-tacatataataatacgagaataatcatactaaagacaaaatacacttacagaatttctgacaaaatccagGCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAA
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cacttcagtggaatcacttattaactggggtcttcgtaatctaccataaaaa-aattgtgataattttttag-atgttcaacaaattgctcactcattgcagGCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAA
upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 7
----tttatgataaaacctcagatcatgtaggaatacatataataatacgagaataatc-atactaaagacaaaatacacttacagaatttctgacaaaatccagGCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAA
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tctctgtatgttttatctt--gatcac--aggttttttaaacctaccatgaaaataatttgtgataattttttagc-tgttcaacaaattgctcactcattgcagGCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAA
upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G30020.1 (Glycine max), 3'ss of exon 8
-------tttatgataaaacctcagatcatgtaggaatacatataataatacgagaataatcatactaaagacaaaatacacttacagaatttctgacaaaatccagGCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAA
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acaaggttttttagacccgctttttggtatgagacttggcacaggatgatttga-aacaatctttttta---ctgaggccaa--acaaaatt-ctccttaattccagGCACTCTACAGATCGTGAGGTTGCTCTTATGATGTTAATGGCATACCTGTCCTACATGCTTGCTGAA
upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G37370.1 (Glycine max), 3'ss of exon 8
tttatgataaaacctcagatcatgtaggaatacat-ataataatacgagaataatcatactaaagacaaaatacacttacagaatttctgacaaaatccagGCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAA
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attataa-atgacttcataccacaaataataacctgatgaagagttatcaataaaaaagaaattatttaccaaggctgaacaaaattctccttaattccagGCACTCTACAGATCGCGAGGTTGCTCTTATGATGTTAATGGCATACCTCTCCTACATGCTTGCTGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagaataatcatactaaagacaaaatacacttacagaatttctgacaaaatccagGCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAA
taatcata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttatgataaaacctcagatcatgtaggaatacatataataatacgagaataatcatactaaagacaaaatacacttacagaatttctgacaaaatccagGCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAA
- - - -taaaacc
- - - - - - - - - -tcatgta
- - - - - - - - - - - - - ggaatac
- - - - - - - - - - - - - - - - - - - - - - - agaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaa