Sequence
atgc intronic sequence ATGC exonic sequence...cttctccattctgcttatttcagaaaacttccaagtgcagtgttcactgctcatcctctctttcatgtagctcattatgttttctaatttttttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G153704_T01 (Zea mays), 3'ss of exon 11
cttctccattctgcttatttcagaaaacttccaagtgcagtgttcactgc-tcatcctctctt-tcatgtagctcattatgttttctaa---tttttttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAG
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---ataaattagatttagatatgaaa--ttcatatggcaacaaactctatattatcatatatggttatattattgctttcgtcatttggaactgtatttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG
upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G098011_T02 (Zea mays), 3'ss of exon 7
--cttctccattctgcttatttcagaaaacttccaagtgcagtgttcactgctcatcctctctttcatgtagctcattatgttttctaatttt-tttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAG
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aattacatctagatatacaattcatatg--ttatggcaacaaattccatatgatata-tggattatatccatgctcttgtaatttgtatttgtatttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTTTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGATGGCTATTCCAG
upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G16150.3 (Arabidopsis thaliana), 3'ss of exon 6
cttctccattctgcttatttcagaaaacttccaagtgcagtgttcactgctcatcctctctttcatgtagctcattatgttttctaatttttttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAG
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------------------gtatgtaacatcccttttttattcatcatcttttattttgggttgcatactg-tgataagttttgatatcgtggtcttctagGTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCATAGGAATGGCTTTTTCTCCAGAAAGCCCAAGGTGGCTCGTTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110403571|gb|EC969185.1|EC969185EST: ATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCAGAAACCCTCTATG GTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTT
genomic: ATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCAGAAACCCTCTATGgtattcttct ... ttttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTT
EST:
gi|110370956|gb|EC934605.1|EC934605EST: ATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCAGAAACCCTCTATG GTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTT
genomic: ATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCAGAAACCCTCTATGgtattcttct ... ttttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actgctcatcctctctttcatgtagctcattatgttttctaatttttttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAG
ttctaat putative branch site (score: 2)
ttttctaattttttt CT-rich tract
tcattatgttttctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttctccattctgcttatttcagaaaacttccaagtgcagtgttcactgctcatcctctctttcatgtagctcattatgttttctaatttttttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAG
cttctcc
- - - - ttctgct
- - - - - - - - - - cagaaaa
- - - - - - - - - - - - - -cttccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtagct