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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaataaatggaatggatcctgagaacttgaacatgataggtaattagtatattgttaaccatttcattttttttttctctttttctttaaatttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGTCGAGATCATAACTGATGTGAATGTTGATGTGGAATCTGCAGAGATTGAT

Basic information

species Vitis vinifera
transcript Vv13s0147g00220.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22014312|gb|BQ799346.1|BQ799346
EST:     GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAG                         CTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
genomic: GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAGgtacgcaact ... atttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
EST: gi|110392201|gb|EC957452.1|EC957452
EST:     GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAG                         CTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
genomic: GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAGgtacgcaact ... atttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
EST: gi|110359925|gb|EC922269.1|EC922269
EST:     GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAG                         CTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
genomic: GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAGgtacgcaact ... atttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
EST: gi|22014843|gb|BQ799877.1|BQ799877
EST:     GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAG                         CTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
genomic: GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAGgtacgcaact ... atttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
EST: gi|22014313|gb|BQ799347.1|BQ799347
EST:     GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAG                         CTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
genomic: GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAGgtacgcaact ... atttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
EST: gi|110697359|gb|EE074276.1|EE074276
EST:     GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAG                         CTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
genomic: GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAGgtacgcaact ... atttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
EST: gi|22014315|gb|BQ799349.1|BQ799349
EST:     GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAG                         CTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
genomic: GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAGgtacgcaact ... atttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
EST: gi|22013161|gb|BQ798180.1|BQ798180
EST:     GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAG                         CTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
genomic: GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAGgtacgcaact ... atttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
EST: gi|110430431|gb|EC996990.1|EC996990
EST:     GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAG                         CTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
genomic: GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAGgtacgcaact ... atttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
EST: gi|110394001|gb|EC958326.1|EC958326
EST:     GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAG                         CTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
genomic: GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAGgtacgcaact ... atttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
EST: gi|110358677|gb|EC923071.1|EC923071
EST:     GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAG                         CTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT
genomic: GTTGATGTTGCAACTCATATACATGTCAAAGATGATGGGCCAAAGAGGAGgtacgcaact ... atttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatattgttaaccatttcattttttttttctctttttctttaaatttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGTCGAGATCATAACTGATGTGAATGTTGATGTGGAATCTGCAGAGATTGAT
       tgttaac  putative branch site (score: 2)
 ccatttcatttttttt  CT-rich tract
 atttcatttttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaataaatggaatggatcctgagaacttgaacatgataggtaattagtatattgttaaccatttcattttttttttctctttttctttaaatttctacagCTTGCTTTATATCGAGACAGCAGATCGACCAGGATTGCTATTGGAAATTGTCGAGATCATAACTGATGTGAATGTTGATGTGGAATCTGCAGAGATTGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
aaataaa
- - - - - - tggatcc
- - - - - - - - - - - - - - gaacatg