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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcttatacagataatacatattatttataaacttaatagagcaaccaaaattgcatcactcaggatcttgtttttgtatctttataaagGTGGACACAAATGTTGGTCGAATTGCTGTGAGATTAGGATGGGTCCCTCTCCAACCACTACCAGAGTCACTTCAGTTGCATCTCCTGGAACT

Basic information

species Vitis vinifera
transcript Vv13s0074g00450.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G32960.1 (Glycine max), 3'ss of exon 15
gtaaagcttatacagataatacatattatttataaacttaatagagcaaccaaaattgcatcactcaggatcttgtttttgtatctttataaagGTGGACACAAATGTTGGTCGAATTGCTGTGAGATTAGGATGGGTCCCTCTCCAACCACTACCAGAGTCACTTCAGTTGCATCTCCTGGAACT
||||  || ||  |||    |   | |  | |||| |    || | ||   ||||      || |  | | | ||| |||           ||||| ||||| ||||||||  | || ||||| ||| | ||||||||||||||||||||||| || ||  |||||||||| || ||||| |||||
gtaagactcatttagaatccattaactgctcataaccaatgtaaatcactaaaaaactatgcaat--gaaccatgtcttt-----------aagGTTGACACCAATGTTGGAAGGATAGCTGTTAGACTTGGATGGGTCCCTCTCCAACCACTTCCTGAAGCACTTCAGTTACACCTCCTTGAACT

upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G34600.1 (Glycine max), 3'ss of exon 13
gtaaagcttatacagataatacatattatttataaacttaatagagcaaccaaaattgcatcactcaggatcttgtttttg-tatctttataaagGTGGACACAAATGTTGGTCGAATTGCTGTGAGATTAGGATGGGTCCCTCTCCAACCACTACCAGAGTCACTTCAGTTGCATCTCCTGGAACT
||||  || ||  |||    |   | |  |||||| |     | | || | ||||   |||     |  || |||   |   |    |  | ||||| ||||| ||||||||  | || || || ||| | ||||||||||||||||||||||| || ||  |||||||||| || ||||| |||||
gtaagcctcatttagaatccattaactgcttataaccaacgcaaatca-ctaaaaaaccatgcaataacatgttgcaatgaatcatatctttaagGTTGACACCAATGTTGGAAGGATAGCAGTTAGACTTGGATGGGTCCCTCTCCAACCACTTCCTGAAGCACTTCAGTTACACCTCCTTGAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023598|gb|FQ432981.1|FQ432981
EST:     AAAGTGTGGAATGTGTGAGGCTGTTAACACTTCATCAACTTGCTTTCCCG                         GTGGACACAAATGTTGGTCGAATTGCTGTGAGATTAGGATGGGTCCCTCTC
genomic: AAAGTGTGGAATGTGTGAGGCTGTTAACACTTCATCAACTTGCTTTCCCGgtaaagctta ... ctttataaagGTGGACACAAATGTTGGTCGAATTGCTGTGAGATTAGGATGGGTCCCTCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatagagcaaccaaaattgcatcactcaggatcttgtttttgtatctttataaagGTGGACACAAATGTTGGTCGAATTGCTGTGAGATTAGGATGGGTCCCTCTCCAACCACTACCAGAGTCACTTCAGTTGCATCTCCTGGAACT
 acttaat  putative branch site (score: 4)
                                          tatcttt  putative PPT
                                 ttgtttttgtatcttt  TA-rich tract