Sequence
atgc intronic sequence ATGC exonic sequence...aaagcagctgttactttctggaaatatcagactttaggagttaggcatctcaaatatcttttatttgcaaataccacatttgacattttgttcttggcagGGTGTTTTGAAAGTAAATCAGTTTATTGAGGTTCGTCCTGGAATTGTTGTTAAAGATGAGAACGGGAACATCAAATGCACACCAATATATTCTAGGATAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os12g07740.1 (Oryza sativa), 3'ss of exon 7
aaagcagctgttactttctggaa-atatcagactttaggagttaggcatctcaaatatcttttatttgcaaataccacatttgacattttgttcttggcagGGTGTTTTGAAAGTAAATCAGTTTATTGAGGTTCGTCCTGGAATTGTTGTTAAAGATGAGAACGGGAACATCAAATGCACACCAATATATTCTAGGATAG
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---gtatgtgttctctcctgtaacataattaaatattttaatcagtagttttttatgttaagtatgagctga-atggta----atgcttcgttc----cagGGAGTTTTGAGGGTTAACCAGAACATTGAAGTTCGCCCGGGAATTGTAATGAAGGATGAGAGCGGCAACATCAAATGCACCCCAATCTATTCGAGGATCG
upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G40750.1 (Glycine max), 3'ss of exon 7
aaagcagctgttactttctggaaatatcagactttaggagttaggcatctcaaatatcttttat-ttgcaaatacca----catttgacattttgttcttggcagGGTGTTTTGAAAGTAAATCAGTTTATTGAGGTTCGTCCTGGAATTGTTGTTAAAGATGAGAACGGGAACATCAAATGCACACCAATATATTCTAGGATAG
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-----tgtggtgcttttgcacaaccaattgaatttgttattatgaactttcaagtggtttaaagaccacagacatcagactcatctgacaatttgttctttgaagGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCAGATGCACGCCCATATACTCAAGAATAG
upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G18240.2 (Glycine max), 3'ss of exon 7
aaagcagctgttactttctggaaatatcagactttaggagttaggcatctcaaatatctt-----ttatttgcaaataccacatttgacattttgttcttggcagGGTGTTTTGAAAGTAAATCAGTTTATTGAGGTTCGTCCTGGAATTGTTGTTAAAGATGAGAACGGGAACATCAAATGCACACCAATATATTCTAGGATAG
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-----tggtatttttgcatccaaaccaattgatttgttattatgaactttcaagttgctggaagaccatgagcatcagactcatctgtcaatttgctctttgcagGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGCATTGTTGTTAAAGACGAGAGTGGAAATATCAGATGCACACCCATATACTCAAGAATAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catctcaaatatcttttatttgcaaataccacatttgacattttgttcttggcagGGTGTTTTGAAAGTAAATCAGTTTATTGAGGTTCGTCCTGGAATTGTTGTTAAAGATGAGAACGGGAACATCAAATGCACACCAATATATTCTAGGATAG
atttgac putative branch site (score: 4)
ttttgttctt CT-rich tract
aaatatcttttatttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaagcagctgttactttctggaaatatcagactttaggagttaggcatctcaaatatcttttatttgcaaataccacatttgacattttgttcttggcagGGTGTTTTGAAAGTAAATCAGTTTATTGAGGTTCGTCCTGGAATTGTTGTTAAAGATGAGAACGGGAACATCAAATGCACACCAATATATTCTAGGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- agcagct
- - - - - - - - - -ggaaata
- - - - - - - - - - - - - - - - - - - - - - -catctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatacc