Sequence
atgc intronic sequence ATGC exonic sequence...caaaatttccatgttctgactttggtatattgatgtgttaggttgaggctttattttctgattttgtttcaaccaatgtgtcaattattgtgaatcatagAGGGAGCAAAGATGGAGATGTATGTGTGGTTGAAGTAAAGAAAATGGAAATCTGTCACTGGAGTAAGAGGCTTCACCTCGGCACATGCATTGCAGCACTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G34380.1 (Glycine max), 3'ss of exon 7
------caaaatttccatgttctgactttggtatattgatgtgttaggttgaggctttattttctgattttgtttcaaccaatgtgtcaattattgtgaatcatagAGGGAGCAAAGATGGAGATGTATGTGTGGTTGAAGTAAAGAAAATGGAAATCTGTCACTGGAGTAAGAGGCTTCACCTCGGCACATGCATTGCAGCACTA
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ttgtgatgtgatttacacttcacttgtatatcacattacaat-ctatgataataatatgtctccagcattt-tttcagctcat---catacttctgt-aatttcagGGGCAGTAAAGATGGAGACATATGTGTAGTTGAAGTAAAGAAAATGCAGATATACCATTATAGCAAGAGACTGCACCTGGGTACAAATATTGCATCGCTT
upper sequence: Vv13s0074g00010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G33180.1 (Glycine max), 3'ss of exon 7
----caaaatttccatgttctgactttggtatattgatgtgttaggttgaggctttat-tttctgattttgtttcaaccaatgtgtcaattattgtgaatcatagAGGGAGCAAAGATGGAGATGTATGTGTGGTTGAAGTAAAGAAAATGGAAATCTGTCACTGGAGTAAGAGGCTTCACCTCGGCACATGCATTGCAGCACTA
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agttcgtgatctgatttgcacttcacttgtatatc-acataacaatctatgataatatgtccccagcatttcttctgctcatcgg---acttctgt-aatttcagGGGCAGTAAAGATGGAGACATATGTGTAGTTGAAGTAAAGAAAATGCAGATATACCATTATAGCAAGAGATTGCACCTGGGTACAAATATTGCATATCTG
upper sequence: Vv13s0074g00010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G52190.1 (Arabidopsis thaliana), 3'ss of exon 7
caaaatttccatgttctgactttggtatattgatgtgttaggttgaggctttattttctgattttgtttcaaccaatgtgtcaattattgtgaatcatagAGGGAGCAAAGATGGAGATGTATGTGTGGTTGAAGTAAAGAAAATGGAAATCTGTCACTGGAGTAAGAGGCTTCACCTCGGCACATGCATTGCAGCACTA
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----gtgagtctttcttcatcccgggctgct----tatcactatcaggcttg----tgtgattgtacataaaacctcatactttgcacctatttttgtagGGGTGGGAAAGATGGAGATGTATCTGTTGCTGAAGTTAAGACAATGGAAATCTACCACTACAGTAAGAGGCTGCATCTTGGTCAATCCATTGCTTCACTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggctttattttctgattttgtttcaaccaatgtgtcaattattgtgaatcatagAGGGAGCAAAGATGGAGATGTATGTGTGGTTGAAGTAAAGAAAATGGAAATCTGTCACTGGAGTAAGAGGCTTCACCTCGGCACATGCATTGCAGCACTA
ttctgat putative branch site (score: 3)
ttattttctgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caaaatttccatgttctgactttggtatattgatgtgttaggttgaggctttattttctgattttgtttcaaccaatgtgtcaattattgtgaatcatagAGGGAGCAAAGATGGAGATGTATGTGTGGTTGAAGTAAAGAAAATGGAAATCTGTCACTGGAGTAAGAGGCTTCACCTCGGCACATGCATTGCAGCACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
caaaatt
- - - - ccatgtt
- - - - - - - - - - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaacca