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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagtcatatgctttagccaataaacaatcccagcttgccatatgcattgtatgcttagccaggaaaatatctgagccatgtttgttgaacttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTAGCTCCATGGCATACCCTGTATCACCTAACATGTAGTAGTATTTCCCATG

Basic information

species Vitis vinifera
transcript Vv13s0067g03320.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34416831|gb|CF415585.1|CF415585
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|110423901|gb|EC990254.1|EC990254
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|110699314|gb|EE076202.1|EE076202
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|110726136|gb|EE101653.1|EE101653
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|351043024|gb|FQ443866.1|FQ443866
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGG
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGG
EST: gi|46918368|gb|CN547697.1|CN547697
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|349829621|gb|FQ421139.1|FQ421139
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|110410730|gb|EC976422.1|EC976422
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|110732400|gb|EE107653.1|EE107653
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGATTCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGA
EST: gi|349827978|gb|FQ422846.1|FQ422846
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGCCGGAACATA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATA
EST: gi|87585501|gb|DY474192.1|DY474192
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|30301939|gb|CB978733.1|CB978733
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|110685295|gb|EE063554.1|EE063554
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTANGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|110367404|gb|EC931336.1|EC931336
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|349825323|gb|FQ418055.1|FQ418055
EST:     GAGAATCTTCAATTGGATAGAANAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|110726723|gb|EE102752.1|EE102752
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAAGACGATGGTANGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|22008796|gb|BQ793830.1|BQ793830
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|110381982|gb|EC938169.1|EC938169
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|30301871|gb|CB978665.1|CB978665
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|30320499|gb|CD003761.1|CD003761
EST:     GAGAATCTTCAATNGGATAGAAAAGCTCGGAATCTGACTACATCTNGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|351016330|gb|FQ446190.1|FQ446190
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAAGGCGGACCATA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATA
EST: gi|110727163|gb|EE103612.1|EE103612
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTTAGG-CGGACCATATGT
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGT-AGGGCGGACCATATGT
EST: gi|56409315|gb|CX017567.1|CX017567
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|26265335|gb|CA816398.1|CA816398
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|349827894|gb|FQ422762.1|FQ422762
EST:     AGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTTGGCG                         -CATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGG
genomic: AGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTT-GGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGG
EST: gi|56409393|gb|CX017645.1|CX017645
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|349824073|gb|FQ417460.1|FQ417460
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGAACC-TATGT
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGA-CCATATGT
EST: gi|83276943|gb|DV940951.1|DV940951
EST:     GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
genomic: GAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTA
EST: gi|83275823|gb|DV939831.1|DV939831
EST:     AGAATCTTCAATTGGATAGAAAAAGCTCGGAATCTGACTACATCTTGGCG                         GCATGCTGGAGATGGAAATCTCGGAGGACGATGGTAGGGCGGACCATATGT
genomic: AGAATCTTCAATTGGATAGAAAA-GCTCGGAATCTGACTACATCTTGGCGgtctgtttct ... ttggttgcagGCATGCTGGAGATGGAA-TCTCGGAGGACGATGGTAGGGCGGACCATATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtatgcttagccaggaaaatatctgagccatgtttgttgaacttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTAGCTCCATGGCATACCCTGTATCACCTAACATGTAGTAGTATTTCCCATG
                  aaaatatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagtcatatgctttagccaataaacaatcccagcttgccatatgcattgtatgcttagccaggaaaatatctgagccatgtttgttgaacttggttgcagGCATGCTGGAGATGGAATCTCGGAGGACGATGGTAGGGCGGACCATATGTAGCTCCATGGCATACCCTGTATCACCTAACATGTAGTAGTATTTCCCATG

- - catatgc
- - - - - - ttagcca
- - - - - - - - ccaataa
- - - - - - - - - - - - caatccc
- - - - - - - - - - - - - - - - -cttgcca
- - - - - - - - - - - - - - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtt