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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggactcaaacttggatctgcagttcataagctttcttgttttgatttttatttattggctaataacatcagaatcttataagttcaatctcttcattgatatgtttctgcagGTTTGGTAGTTTGCTTGCCTGTGAAACCTTTCATGCAGATGTTCATGCAGGCAATTTGTGGTTGCTACGTGATGGCCGCATTGGGTTTCTTGATTTTG

Basic information

species Vitis vinifera
transcript Vv13s0067g03210.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os07g12530.2 (Oryza sativa), 3'ss of exon 8
gtaggactcaaacttggatctgcagttcataagctttcttgttttgatttttatttattggctaataacatcagaatcttataagttcaatctcttcattgatatgtt-tctgcagGTTTGGTAGTTTGCTTGCCTGTGAAACCTTTCATGCAGATGTTCATGCAGGCAATTTGTGGTTGCTACGTGATGGCCGCATTGGGTTTCTTGATTTTG
||| |   ||  | |     ||   |||   |  |    | ||| | | ||| |    |   |      ||   |  || | ||     || |   |||   |      | ||||||||||| || ||| || | |||||| |||| ||||||||||| |||||||| ||||| |||||||| || ||||| ||  |||| |||||||||||||
gtatgctccatgcgtc--cttgtgattccatacatcatatatttgggtatttctgccattcattgccttattcaatcctcagaataggcatgttgacatatgtgcaaaatgtgcagGTTTGGAAGCTTGATTTCATGTGAATCCTTCCATGCAGATGTGCATGCAGGAAATTTATGGTTGCTCCGAGATGGACGTGTTGGATTTCTTGATTTTG

upper sequence: Vv13s0067g03210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G36520.1 (Glycine max), 3'ss of exon 6
gtaggactcaaacttggatctgcagttcataagctttcttgttttgatttt-tatttattggctaataacatcagaatcttataagttcaatctcttcattgatatgtttctgcagGTTTGGTAGTTTGCTTGCCTGTGAAACCTTTCATGCAGATGTTCATGCAGGCAATTTGTGGTTGCTACGTGATGGCCGCATTGGGTTTCTTGATTTTG
                             || |  | |    ||  |||||  | |||    |   || | ||    | | | |||  |  | | |      |||   |  ||||||||||| ||||||||||| |||||| | |||||||||||||| |||||||| ||| ||||| | |||||||||||||| |||||||||||||| || |
----------------------------gtatgactccgaaattatattttgcagttaacatccttta-cttctccttttaacaagaactgtgtatctcggtataaaatgttgcagGTTTGGAAGTTTGCTTGCATGTGAATCTTTTCATGCAGATGTACATGCAGGAAATCTGTGGCTTCTACGTGATGGCCGTATTGGGTTTCTTGACTTCG

upper sequence: Vv13s0067g03210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G38380.1 (Glycine max), 3'ss of exon 6
gtaggactcaaacttggatctgcagttcataagctttcttgttttgatttttatttattggctaataacatcagaatcttataagttcaatctcttcattgatatgtttctgcagGTTTGGTAGTTTGCTTGCCTGTGAAACCTTTCATGCAGATGTTCATGCAGGCAATTTGTGGTTGCTACGTGATGGCCGCATTGGGTTTCTTGATTTTG--
              ||  |||| | |||      |||   |||   | |  |||   |    |||       ||||  || |     | |||||   ||  | |||||   |||||||||| ||||||||||| ||| ||   |||||||||||||| |||||||| ||| ||||| | |||| |||||| |  ||| |||||||| | ||||  
-----------gtatgactctgaaattct---attttgcagttagcaatcctatacttcttttaac-----tagaactttgt-----ctatctcggtataaa-atgtt---gcagGTTTGGAAGTTTGCTTGCATGTAAATTGTTTCATGCAGATGTACATGCAGGAAATCTGTGGCTTCTACATGATGGTCATATTCGGTTTCTTAACTTTGGT

upper sequence: Vv13s0067g03210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G38380.2 (Glycine max), 3'ss of exon 6
gtaggactcaaacttggatctgcagttcataagctttcttgttttgatttttatttattggctaataacatcagaatcttataagttcaatctcttcattgatatgtttctgcagGTTTGGTAGTTTGCTTGCCTGTGAAACCTTTCATGCAGATGTTCATGCAGGCAATTTGTGGTTGCTACGTGATGGCCGCATTGGGTTTCTTGATTTTG
              ||  |||| | |||      |||   |||   | |  |||   |    |||       ||||  || |     | |||||   ||  | |||||   |||||||||| ||||||||||| ||| ||   |||||||||||||| |||||||| ||| ||||| | |||| |||||| |  ||| |||||||| | ||||
-----------gtatgactctgaaattct---attttgcagttagcaatcctatacttcttttaac-----tagaactttgt-----ctatctcggtataaa-atgtt---gcagGTTTGGAAGTTTGCTTGCATGTAAATTGTTTCATGCAGATGTACATGCAGGAAATCTGTGGCTTCTACATGATGGTCATATTCGGTTTCTTAACTTTG

upper sequence: Vv13s0067g03210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G05200.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaggactcaaacttggatctgcagttcataagctttcttgttttgatttttatt-tattggctaataacatcagaatcttataagttcaatctcttcattgatatgtttctgcagGTTTGGTAGTTTGCTTGCCTGTGAAACCTTTCATGCAGATGTTCATGCAGGCAATTTGTGGTTGCTACGTGATGGCCGCATTGGGTTTCTTGATTTTG
                    |    |   | |  ||   | || |||||   ||| |  |  ||  |||    ||    |  |||  | |||||     | ||| |   | ||||||||||| || || ||||| ||||||| ||| ||||| ||||| |||||||| || || ||| || | ||||||||||| |||||||||||||||||||
-------------------gtaagatctttgaaattcaatattatgattaagattgttctccctcctaaatgtagctgttagtaaaatgaatcttcatgt-gatgtaact-tgcagGTTTGGAAGCTTACTTGCTTGTGAAAGCTTCCATGCTGATGTACATGCAGGAAACTTATGGCTGTTGCGTGATGGCCGGATTGGGTTTCTTGATTTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110358410|gb|EC922602.1|EC922602
EST:     AGTCCTGAGACCAGTCTTGTAACTGCCCTTAATGTATG                         GTTTGGTAGTTTGCTTGCCTGTGAAACCTTTCATGCAGATGTTCATGCAGG
genomic: AGTCCTGAGACCAGTCTTGTAACTGCCCTTAATGTATGgtaggactca ... gtttctgcagGTTTGGTAGTTTGCTTGCCTGTGAAACCTTTCATGCAGATGTTCATGCAGG
EST: gi|110400587|gb|EC967153.1|EC967153
EST:     TCACTTGTTTCTAGTCCTGAGACCAGTCTTGTAACTGCCCTTAATGTATG                         GTTTGGTAGTTTGCTTGCCTGTGAAACCTTTCATGCAGATGTTCATGCAGG
genomic: TCACTTGTTTCTAGTCCTGAGACCAGTCTTGTAACTGCCCTTAATGTATGgtaggactca ... gtttctgcagGTTTGGTAGTTTGCTTGCCTGTGAAACCTTTCATGCAGATGTTCATGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaataacatcagaatcttataagttcaatctcttcattgatatgtttctgcagGTTTGGTAGTTTGCTTGCCTGTGAAACCTTTCATGCAGATGTTCATGCAGGCAATTTGTGGTTGCTACGTGATGGCCGCATTGGGTTTCTTGATTTTG
                                            tgtttct  CT-rich tract
              aatcttataa  TA-rich tract