Sequence
atgc intronic sequence ATGC exonic sequencegtgagcatttaaagatccactaaccgcttttttcttcttcatgaattttcggtcccatcttattctgtgcattgcagGTTTTCATTGTTCTATCCTGCTTGATCTCTGTCTCAGTCAATTTTAGCACCTTTCTTGTGATTGGCAAGACATCGCCCGTCACCTATCAGGTCCTGGGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os05g07670.1 (Oryza sativa), 3'ss of exon 6
gtgagcatttaaagatccactaaccgcttttttcttcttcatgaattttcggtcccatcttattct-gtgcat--tgcagGTTTTCATTGTTCTATCCTGCTTGATCTCTGTCTCAGTCAATTTTAGCACCTTTCTTGTGATTGGCAAGACATCGCCCGTCACCTATCAGGTCCTGGGGC
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gtaagcagtgaaacaactttcgaagacttactttgaccttgttttatctgattctgattttgcccttgtttcttatgcagTTTTTCATTGTATTATCGTGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCTGTCACTTACCAAGTCCTGGGCC
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os01g07310.3 (Oryza sativa), 3'ss of exon 5
gtgagcatttaaagatccactaaccgcttttttcttcttcatgaattttcggtcccatcttattctgtgca----ttgcagGTTTTCATTGTTCTATCCTGCTTGATCTCTGTCTCAGTCAATTTTAGCACCTTTCTTGTGATTGGCAAGACATCGCCCGTCACCTATCAGGTCCTGGGGC
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gtaagcagtaaactgagttttggagacttatgttgaacgtagctgtgcttcatctgactcggttctttacggtatctgcagTTTTTCATTGTGCTGTCATGCTTGATATCAGTCTCAGTGAACTTCAGCACTTTTCTTGTGATCGGGAAAACCTCTCCTGTAACTTACCAAGTGCTTGGCC
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G14970.2 (Glycine max), 3'ss of exon 6
gtgagcatttaaagatccactaa----ccgcttttttcttcttcatgaattttcggtccca--tcttattctgtgcattgcagGTTTTCATTGTTCTATCCTGCTTGATCTCTGTCTCAGTCAATTTTAGCACCTTTCTTGTGATTGGCAAGACATCGCCCGTCACCTATCAGGTCCTGGGGC
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gtaagagttaaatagtcttcccaagtcccaaattattattattattattaatgcgttctcaattgtttctttctgcattgcagGTTTTCATAATTCTTTCCTGCCTTATCTCTATCTCGGTCAATTTCAGTACGTTCCTTGTTATTGGAAAGACATCTCCAGTCACCTATCAGGTTCTTGGAC
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G39920.1 (Glycine max), 3'ss of exon 6
-----------gtgagcatttaaagatcca-ctaaccgcttttttcttcttcat---gaattttcggtcccatcttattctgtgcattgcagGTTTTCATTGTTCTATCCTGCTTGATCTCTGTCTCAGTCAATTTTAGCACCTTTCTTGTGATTGGCAAGACATCGCCCGTCACCTATCAGGTCCTGGGGC
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gtaagagttaaatagtcttcccaagttccaacttattattattattattattattttgaatgcgttctcaactgtttctttctgcattgcagGTTTTCATAATTCTTTCCTGCCTTATCTCCATCTCTGTCAATTTCAGTACGTTCCTTGTTATTGGAAAGACATCTCCAGTCACCTATCAGGTTCTTGGAC
upper sequence: Vv13s0067g02970.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G14980.1 (Glycine max), 3'ss of exon 6
---------------gtgagcatttaaagatccactaaccgcttttttcttcttcatgaattttcggtcccatcttattctgtgcattgcagGTTTTCATTGTTCTATCCTGCTTGATCTCTGTCTCAGTCAATTTTAGCACCTTTCTTGTGATTGGCAAGACATCGCCCGTCACCTATCAGGTCCTGGGGC
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gtgagatttaaaatgatttgcgtccttatttttaa-acccaaattcctttgttttgttaatttattttcggctgctattttctacactacagATGGTCATTATTCTTTCATGCATGATCTCTATCGCGGTGAATTTTAGTACATTTCTTGTAATTGGAAAGACATCTCCAATCACCTATCAGGTTCTTGGACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110363781|gb|EC927396.1|EC927396EST: TGACTAGTCAAAACGTATTTGCTTTCAAATATACACCGCAAGTTCTG GTTTTCATTGTTCTATCCTGCTTGATCTCTGTCTCAGTCAATTTTAGCACC
genomic: TGACTAGTCAAAACGTATTTGCTTTCAAATATACACCGCAAGTTCTGgtgagcattt ... tgcattgcagGTTTTCATTGTTCTATCCTGCTTGATCTCTGTCTCAGTCAATTTTAGCACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accgcttttttcttcttcatgaattttcggtcccatcttattctgtgcattgcagGTTTTCATTGTTCTATCCTGCTTGATCTCTGTCTCAGTCAATTTTAGCACCTTTCTTGTGATTGGCAAGACATCGCCCGTCACCTATCAGGTCCTGGGGC
cactaac putative branch site (score: 1)
ttttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtgagcatttaaagatccactaaccgcttttttcttcttcatgaattttcggtcccatcttattctgtgcattgcagGTTTTCATTGTTCTATCCTGCTTGATCTCTGTCTCAGTCAATTTTAGCACCTTTCTTGTGATTGGCAAGACATCGCCCGTCACCTATCAGGTCCTGGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA