Sequence
atgc intronic sequence ATGC exonic sequencegtttagttctcacttgtatctttgtgtcgatggattctgtgtaacatatttccacaactatatgtcctaaacttctctttatttttcacttatgacaaagttgatcattttatttctcaatggtgtagGAAGAAGCTTATGTAGAATTTCTGCGTATAAGAAGGGTTCCTCTTCAAGGAATGACATGCTCTAGTGATGCTTCTGATGTTGTTCCTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G02760.1 (Glycine max), 3'ss of exon 7
gtttagttctcacttgtatctttgtgtcgatggattctgtgtaacatatttccacaactatatgtcctaaacttctctttatttttcacttatgacaaagttgatcattttatttctcaatggtgtagGAAGAAGCTTATGTAGAATTTCTGCGTATAAGAAGGGTTCCTCTTCAAGGAATGACATGCTCTAGTGATGCTTCTGATGTTGTTCCTCAG
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gtttggt---cacaagtatattcatgt------------tgtaa--tgcttttgatatttcatgc---aggattctttagaagtgttgattttattgtaatg---taatctata---caaatgtgtagGAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCTCTTCAAGAGAGAATATGTGCTGATGAAGCATCTGATGTTGTTCCTCAG
upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G35640.1 (Glycine max), 3'ss of exon 7
gtttagttctcacttgtatctttgtgtcgatggattctgtgtaacatatttccacaactatatgtcctaaacttctctttatttttcacttatgacaaagttgatcattttatttctcaatggtgtagGAAGAAGCTTATGTAGAATTTCTGCGTATAAGAAGGGTTCCTCTTCAAGGAATGACATGCTCTAGTGATGCTTCTGATGTTGTTCCTCAG
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-----------gtttg-gtcaaagtat--attaatgctgta----atgcttttgatattccatgcagta---ttcttttcaagtgtcaattttattgtaatg---taatctata---caaatgtgtagGAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCCCTTCAAGAGAGAATATGTTCTGATGATGCTACCGATGTTGTTCCTCAG
upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G05450.1 (Arabidopsis thaliana), 3'ss of exon 7
gtttagttctcacttgtatctttgtgtcgatggattctgtgtaacatatttccacaactatatgtcctaaacttctctttatttttcacttatgacaaagttgatcattttatttctcaatg-gtgtagGAAGAAGCTTATGTAGAATTTCTGCGTATAAGAAGGGTTCCTCTTCAAGGAATGACATGCTCTAGTGATGCTTCTGATGTTGTTCCTCAG
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----------------------------gtttagctttgaccactttatgttctc--ttgtgcaccccatagttacatcaga-----aagcatga-aaagctgaaaagttcacttgcatatatgtgtagGAAGAAGCCTATGTAGAGTTTATGCGCATAAGAAGAGTCCCTTTGGAAGAGAGAAAATGCTCTGAGGACGCATCCGATGTCATCCCGATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctctttatttttcacttatgacaaagttgatcattttatttctcaatggtgtagGAAGAAGCTTATGTAGAATTTCTGCGTATAAGAAGGGTTCCTCTTCAAGGAATGACATGCTCTAGTGATGCTTCTGATGTTGTTCCTCAG
agttgat putative branch site (score: 5)
tttctca putative PPT
ttatttttcacttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttagttctcacttgtatctttgtgtcgatggattctgtgtaacatatttccacaactatatgtcctaaacttctctttatttttcacttatgacaaagttgatcattttatttctcaatggtgtagGAAGAAGCTTATGTAGAATTTCTGCGTATAAGAAGGGTTCCTCTTCAAGGAATGACATGCTCTAGTGATGCTTCTGATGTTGTTCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA